Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1671

Experiment: 7H9 with Levofloxacin 0.3 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Levofloxacin 0.3 ug/mL
1,895,652	-				+0.1
1,895,876	+		Rv1669	0.42	-0.9
1,895,877	-		Rv1669	0.42	-0.4
1,895,891	+		Rv1669	0.46	-1.8
1,895,960	+		Rv1669	0.65	-0.4
1,895,961	-		Rv1669	0.65	-2.2
1,896,005	-		Rv1669	0.77	+0.1
1,896,280	-		Rv1670	0.46	+0.8
1,896,280	-		Rv1670	0.46	-1.3
1,896,303	+		Rv1670	0.53	+0.7
1,896,334	-		Rv1670	0.61	-0.1
1,896,334	-		Rv1670	0.61	-0.1
1,896,336	+		Rv1670	0.62	+0.1
1,896,628	-		Rv1671	0.39	-0.3
1,896,673	+		Rv1671	0.50	-1.3
1,896,674	-		Rv1671	0.51	-0.9
1,896,821	-		Rv1671	0.88	-0.7
1,896,866	-				-0.7
1,896,874	+				+0.2
1,896,933	+				+0.3
1,896,934	-				-0.6
1,896,988	-				+0.8
1,897,281	-		Rv1672c	0.30	-1.6
1,897,354	+		Rv1672c	0.36	-3.0
1,897,416	+		Rv1672c	0.41	-0.3
1,897,444	+		Rv1672c	0.43	+2.4
1,897,456	+		Rv1672c	0.44	+0.1
1,897,468	+		Rv1672c	0.44	+2.4