Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv0899

Experiment: 7H9 with Levofloxacin 0.3 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Levofloxacin 0.3 ug/mL
1,002,021	+		Rv0897c	0.75	-0.3
1,002,021	+		Rv0897c	0.75	-1.2
1,002,021	+		Rv0897c	0.75	+2.5
1,002,022	-		Rv0897c	0.75	-0.3
1,002,145	-		Rv0897c	0.83	+1.1
1,002,145	-		Rv0897c	0.83	-0.4
1,002,226	-		Rv0897c	0.88	+1.5
1,002,342	+				+0.2
1,002,343	-				-0.9
1,002,343	-				-0.6
1,002,443	-				+0.0
1,002,443	-				-0.3
1,002,452	-				-0.3
1,002,811	-				-0.2
1,002,820	+				-0.7
1,002,820	+				+1.2
1,002,922	+		Rv0899	0.11	-1.1
1,003,521	-		Rv0899	0.72	-1.1
1,003,616	-		Rv0899	0.82	-0.7
1,003,662	-		Rv0899	0.87	-1.3
1,003,790	+				-0.7
1,003,832	+		Rv0900	0.18	-0.9
1,003,833	-		Rv0900	0.18	-0.2
1,004,086	-		Rv0901	0.24	-1.3
1,004,257	-		Rv0901	0.57	+2.2
1,004,365	+		Rv0901	0.77	+0.7
1,004,368	+		Rv0901	0.78	-1.7
1,004,369	-		Rv0901	0.78	-0.4
1,004,389	+		Rv0901	0.82	+0.8
1,004,389	+		Rv0901	0.82	-1.0
1,004,390	-		Rv0901	0.82	-1.1
1,004,397	+		Rv0901	0.83	+2.2