Experiment: 7H9 with Levofloxacin 0.3 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0813c and Rv0814c are separated by 162 nucleotides Rv0814c and Rv0815c are separated by 1 nucleotides Rv0815c and Rv0816c are separated by 292 nucleotides Rv0816c and Rv0817c overlap by 4 nucleotides
Rv0813c: Rv0813c - Conserved protein, at 907,338 to 908,018
Rv0813c
Rv0814c: Rv0814c - Conserved protein SseC2, at 908,181 to 908,483
Rv0814c
Rv0815c: Rv0815c - Probable thiosulfate sulfurtransferase CysA2 (rhodanese-like protein) (thiosulfate cyanide transsulfurase) (thiosulfate thiotransferase), at 908,485 to 909,318
Rv0815c
Rv0816c: Rv0816c - Probable thioredoxin ThiX, at 909,611 to 910,033
Rv0816c
Rv0817c: Rv0817c - Probable conserved exported protein, at 910,030 to 910,842
Rv0817c
Position (kb) 908
909
910 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 907.575 kb on + strand, within Rv0813c at 907.575 kb on + strand, within Rv0813c at 907.576 kb on - strand, within Rv0813c at 907.576 kb on - strand, within Rv0813c at 907.647 kb on + strand, within Rv0813c at 907.648 kb on - strand, within Rv0813c at 907.648 kb on - strand, within Rv0813c at 907.663 kb on + strand, within Rv0813c at 907.664 kb on - strand, within Rv0813c at 907.664 kb on - strand, within Rv0813c at 907.711 kb on + strand, within Rv0813c at 907.712 kb on - strand, within Rv0813c at 907.756 kb on + strand, within Rv0813c at 908.068 kb on + strand at 908.125 kb on + strand at 908.125 kb on + strand at 908.125 kb on + strand at 908.125 kb on + strand at 908.200 kb on - strand at 908.200 kb on - strand at 909.337 kb on + strand at 909.337 kb on + strand at 909.385 kb on + strand at 909.385 kb on + strand at 909.386 kb on - strand at 909.386 kb on - strand at 909.440 kb on + strand at 909.454 kb on + strand at 909.455 kb on - strand at 909.464 kb on + strand at 909.464 kb on + strand at 909.464 kb on + strand at 909.500 kb on + strand at 909.501 kb on - strand at 909.605 kb on + strand at 909.605 kb on + strand at 909.825 kb on - strand, within Rv0816c at 910.003 kb on + strand at 910.003 kb on + strand at 910.004 kb on - strand at 910.004 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Levofloxacin 0.3 ug/mL remove 907,575 + Rv0813c 0.35 -1.8 907,575 + Rv0813c 0.35 +0.1 907,576 - Rv0813c 0.35 -2.0 907,576 - Rv0813c 0.35 +1.9 907,647 + Rv0813c 0.45 +3.7 907,648 - Rv0813c 0.46 -0.0 907,648 - Rv0813c 0.46 +2.1 907,663 + Rv0813c 0.48 -0.7 907,664 - Rv0813c 0.48 -0.1 907,664 - Rv0813c 0.48 -0.9 907,711 + Rv0813c 0.55 -0.4 907,712 - Rv0813c 0.55 +0.3 907,756 + Rv0813c 0.61 +0.0 908,068 + -0.0 908,125 + -1.0 908,125 + -1.1 908,125 + -0.0 908,125 + +1.1 908,200 - -0.1 908,200 - -0.5 909,337 + +0.8 909,337 + -0.1 909,385 + +0.2 909,385 + -1.0 909,386 - -0.1 909,386 - -0.1 909,440 + -0.9 909,454 + +0.3 909,455 - -1.8 909,464 + -0.3 909,464 + -0.6 909,464 + +1.5 909,500 + +2.1 909,501 - +1.1 909,605 + +0.4 909,605 + -0.8 909,825 - Rv0816c 0.51 -0.7 910,003 + -0.7 910,003 + -0.5 910,004 - -0.5 910,004 - +0.5
Or see this region's nucleotide sequence