Experiment: 7H9 with Levofloxacin 0.3 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0688 and Rv0689c overlap by 4 nucleotides Rv0689c and Rv0690c are separated by 612 nucleotides Rv0690c and Rv0691c overlap by 4 nucleotides Rv0691c and Rv0691A overlap by 9 nucleotides Rv0691A and Rv0692 overlap by 16 nucleotides
Rv0688: Rv0688 - Putative ferredoxin reductase, at 787,940 to 789,160
Rv0688
Rv0689c: Rv0689c - Hypothetical protein, at 789,157 to 789,411
Rv0689c
Rv0690c: Rv0690c - Conserved hypothetical protein, at 790,024 to 791,073
Rv0690c
Rv0691c: Rv0691c - Probable transcriptional regulatory protein, at 791,070 to 791,666
Rv0691c
Rv0691A: Rv0691A - Mycofactocin precursor protein, at 791,658 to 791,846
Rv0691A
Rv0692: Rv0692 - Conserved hypothetical protein, at 791,831 to 792,160
Rv0692
Position (kb) 790
791
792 Strain fitness (log2 ratio) -2
-1
0
1
2 at 789.032 kb on + strand, within Rv0688 at 789.036 kb on - strand, within Rv0688 at 789.142 kb on - strand at 789.170 kb on - strand at 789.213 kb on + strand, within Rv0689c at 789.213 kb on + strand, within Rv0689c at 789.214 kb on - strand, within Rv0689c at 789.214 kb on - strand, within Rv0689c at 789.418 kb on + strand at 789.419 kb on - strand at 789.695 kb on + strand at 789.696 kb on - strand at 790.101 kb on + strand at 790.102 kb on - strand at 790.105 kb on + strand at 790.106 kb on - strand at 790.106 kb on - strand at 790.106 kb on - strand at 790.106 kb on - strand at 790.113 kb on - strand at 790.244 kb on + strand, within Rv0690c at 790.413 kb on - strand, within Rv0690c at 790.577 kb on + strand, within Rv0690c at 790.628 kb on - strand, within Rv0690c at 790.998 kb on - strand at 790.998 kb on - strand at 791.167 kb on + strand, within Rv0691c at 791.284 kb on + strand, within Rv0691c at 791.284 kb on + strand, within Rv0691c at 791.284 kb on + strand, within Rv0691c at 791.285 kb on - strand, within Rv0691c at 791.285 kb on - strand, within Rv0691c at 791.299 kb on + strand, within Rv0691c at 791.841 kb on + strand at 791.917 kb on - strand, within Rv0692 at 791.980 kb on + strand, within Rv0692 at 791.980 kb on + strand, within Rv0692 at 791.981 kb on - strand, within Rv0692
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Levofloxacin 0.3 ug/mL remove 789,032 + Rv0688 0.89 +1.2 789,036 - Rv0688 0.90 -0.8 789,142 - +1.0 789,170 - -0.7 789,213 + Rv0689c 0.22 +0.4 789,213 + Rv0689c 0.22 -0.8 789,214 - Rv0689c 0.22 -0.8 789,214 - Rv0689c 0.22 -0.2 789,418 + -0.2 789,419 - +0.7 789,695 + -1.0 789,696 - -1.1 790,101 + -0.3 790,102 - -0.8 790,105 + -0.4 790,106 - -0.6 790,106 - +0.2 790,106 - -0.5 790,106 - +0.3 790,113 - -0.4 790,244 + Rv0690c 0.21 -0.3 790,413 - Rv0690c 0.37 -0.5 790,577 + Rv0690c 0.53 -0.8 790,628 - Rv0690c 0.58 -1.5 790,998 - -1.0 790,998 - -1.5 791,167 + Rv0691c 0.16 +1.2 791,284 + Rv0691c 0.36 +0.7 791,284 + Rv0691c 0.36 -1.9 791,284 + Rv0691c 0.36 +0.0 791,285 - Rv0691c 0.36 +0.2 791,285 - Rv0691c 0.36 -1.1 791,299 + Rv0691c 0.38 -1.6 791,841 + -0.7 791,917 - Rv0692 0.26 -1.0 791,980 + Rv0692 0.45 -2.6 791,980 + Rv0692 0.45 +2.0 791,981 - Rv0692 0.45 +0.5
Or see this region's nucleotide sequence