Experiment: 7H9 with Levofloxacin 0.3 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0573c and Rv0574c are separated by 9 nucleotides Rv0574c and Rv0575c are separated by 184 nucleotides
Rv0573c: Rv0573c - Nicotinic acid phosphoribosyltransferase PncB2, at 665,851 to 667,242
Rv0573c
Rv0574c: Rv0574c - Conserved hypothetical protein, at 667,252 to 668,394
Rv0574c
Rv0575c: Rv0575c - Possible oxidoreductase, at 668,579 to 669,745
Rv0575c
Position (kb) 667
668
669 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 666.260 kb on + strand, within Rv0573c at 666.261 kb on - strand, within Rv0573c at 666.539 kb on - strand, within Rv0573c at 666.548 kb on + strand, within Rv0573c at 666.549 kb on - strand, within Rv0573c at 666.549 kb on - strand, within Rv0573c at 666.717 kb on - strand, within Rv0573c at 667.028 kb on + strand, within Rv0573c at 667.104 kb on - strand at 667.254 kb on - strand at 667.267 kb on + strand at 667.472 kb on + strand, within Rv0574c at 667.473 kb on - strand, within Rv0574c at 667.473 kb on - strand, within Rv0574c at 667.473 kb on - strand, within Rv0574c at 667.524 kb on - strand, within Rv0574c at 667.572 kb on - strand, within Rv0574c at 667.572 kb on - strand, within Rv0574c at 667.572 kb on - strand, within Rv0574c at 667.572 kb on - strand, within Rv0574c at 667.573 kb on + strand, within Rv0574c at 667.573 kb on + strand, within Rv0574c at 667.574 kb on - strand, within Rv0574c at 667.574 kb on - strand, within Rv0574c at 667.676 kb on + strand, within Rv0574c at 667.677 kb on - strand, within Rv0574c at 667.709 kb on - strand, within Rv0574c at 668.087 kb on + strand, within Rv0574c at 668.261 kb on + strand, within Rv0574c at 668.280 kb on + strand at 668.282 kb on + strand at 668.282 kb on + strand at 668.282 kb on + strand at 668.283 kb on - strand at 668.440 kb on - strand at 668.446 kb on + strand at 668.447 kb on - strand at 668.447 kb on - strand at 668.447 kb on - strand at 668.461 kb on - strand at 668.548 kb on + strand at 668.549 kb on - strand at 668.835 kb on + strand, within Rv0575c at 668.835 kb on + strand, within Rv0575c at 668.881 kb on - strand, within Rv0575c at 669.154 kb on - strand, within Rv0575c at 669.154 kb on - strand, within Rv0575c at 669.162 kb on + strand, within Rv0575c at 669.162 kb on + strand, within Rv0575c at 669.162 kb on + strand, within Rv0575c at 669.162 kb on + strand, within Rv0575c at 669.226 kb on - strand, within Rv0575c
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Levofloxacin 0.3 ug/mL remove 666,260 + Rv0573c 0.29 +0.6 666,261 - Rv0573c 0.29 -0.2 666,539 - Rv0573c 0.49 +0.7 666,548 + Rv0573c 0.50 +0.4 666,549 - Rv0573c 0.50 -1.0 666,549 - Rv0573c 0.50 +1.4 666,717 - Rv0573c 0.62 -0.7 667,028 + Rv0573c 0.85 -0.8 667,104 - +0.4 667,254 - +0.2 667,267 + +2.0 667,472 + Rv0574c 0.19 +0.4 667,473 - Rv0574c 0.19 +2.4 667,473 - Rv0574c 0.19 +0.7 667,473 - Rv0574c 0.19 +4.0 667,524 - Rv0574c 0.24 -0.7 667,572 - Rv0574c 0.28 -1.1 667,572 - Rv0574c 0.28 +2.6 667,572 - Rv0574c 0.28 -0.5 667,572 - Rv0574c 0.28 +0.0 667,573 + Rv0574c 0.28 +0.1 667,573 + Rv0574c 0.28 +0.7 667,574 - Rv0574c 0.28 -0.4 667,574 - Rv0574c 0.28 +0.6 667,676 + Rv0574c 0.37 +0.8 667,677 - Rv0574c 0.37 -0.5 667,709 - Rv0574c 0.40 -0.1 668,087 + Rv0574c 0.73 +0.0 668,261 + Rv0574c 0.88 -0.5 668,280 + +0.3 668,282 + -0.7 668,282 + +0.6 668,282 + +2.0 668,283 - -0.5 668,440 - -0.2 668,446 + -1.0 668,447 - +0.5 668,447 - -1.2 668,447 - -1.1 668,461 - -0.3 668,548 + +1.2 668,549 - -0.5 668,835 + Rv0575c 0.22 +0.7 668,835 + Rv0575c 0.22 -0.1 668,881 - Rv0575c 0.26 +1.4 669,154 - Rv0575c 0.49 -0.8 669,154 - Rv0575c 0.49 -0.8 669,162 + Rv0575c 0.50 +1.0 669,162 + Rv0575c 0.50 -0.2 669,162 + Rv0575c 0.50 +0.6 669,162 + Rv0575c 0.50 -0.2 669,226 - Rv0575c 0.55 -0.8
Or see this region's nucleotide sequence