Experiment: 7H9 with Levofloxacin 0.3 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0435c and Rv0436c overlap by 4 nucleotides Rv0436c and Rv0437c overlap by 4 nucleotides Rv0437c and Rv0438c are separated by 60 nucleotides
Rv0435c: Rv0435c - Putative conserved ATPase, at 522,347 to 524,533
Rv0435c
Rv0436c: Rv0436c - Probable CDP-diacylglycerol--serine O-phosphatidyltransferase PssA (PS synthase) (phosphatidylserine synthase), at 524,530 to 525,390
Rv0436c
Rv0437c: Rv0437c - Possible phosphatidylserine decarboxylase Psd (PS decarboxylase), at 525,387 to 526,082
Rv0437c
Rv0438c: Rv0438c - Probable molybdopterin biosynthesis protein MoeA2, at 526,143 to 527,360
Rv0438c
Position (kb) 525
526
527 Strain fitness (log2 ratio) -1
0
1
2
3 at 524.932 kb on + strand, within Rv0436c at 524.932 kb on + strand, within Rv0436c at 524.933 kb on - strand, within Rv0436c at 525.032 kb on + strand, within Rv0436c at 525.116 kb on + strand, within Rv0436c at 525.347 kb on - strand at 525.359 kb on - strand at 525.359 kb on - strand at 525.470 kb on - strand, within Rv0437c at 525.506 kb on - strand, within Rv0437c at 526.093 kb on + strand at 526.093 kb on + strand at 526.093 kb on + strand at 526.094 kb on - strand at 526.145 kb on - strand at 526.297 kb on - strand, within Rv0438c at 526.558 kb on + strand, within Rv0438c at 526.559 kb on - strand, within Rv0438c at 526.594 kb on + strand, within Rv0438c at 526.595 kb on - strand, within Rv0438c at 526.763 kb on - strand, within Rv0438c at 526.779 kb on + strand, within Rv0438c at 526.780 kb on - strand, within Rv0438c
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Levofloxacin 0.3 ug/mL remove 524,932 + Rv0436c 0.47 -0.8 524,932 + Rv0436c 0.47 +0.3 524,933 - Rv0436c 0.47 +2.4 525,032 + Rv0436c 0.58 -0.8 525,116 + Rv0436c 0.68 +3.0 525,347 - +1.4 525,359 - -0.2 525,359 - +0.4 525,470 - Rv0437c 0.12 -0.6 525,506 - Rv0437c 0.17 -1.3 526,093 + -1.6 526,093 + -0.6 526,093 + -0.2 526,094 - -0.6 526,145 - +1.0 526,297 - Rv0438c 0.13 -1.2 526,558 + Rv0438c 0.34 -0.7 526,559 - Rv0438c 0.34 -0.3 526,594 + Rv0438c 0.37 -0.7 526,595 - Rv0438c 0.37 -1.1 526,763 - Rv0438c 0.51 +2.0 526,779 + Rv0438c 0.52 +2.3 526,780 - Rv0438c 0.52 -0.6
Or see this region's nucleotide sequence