Experiment: 7H9 with Levofloxacin 0.3 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0394c and Rv0395 are separated by 98 nucleotides Rv0395 and Rv0396 are separated by 5 nucleotides Rv0396 and Rv0397 are separated by 73 nucleotides Rv0397 and Rv0397A are separated by 209 nucleotides Rv0397A and Rv0398c are separated by 36 nucleotides
Rv0394c: Rv0394c - Possible secreted protein, at 474,122 to 474,841
Rv0394c
Rv0395: Rv0395 - Hypothetical protein, at 474,940 to 475,344
Rv0395
Rv0396: Rv0396 - Hypothetical protein, at 475,350 to 475,742
Rv0396
Rv0397: Rv0397 - Conserved 13E12 repeat family protein, at 475,816 to 476,184
Rv0397
Rv0397A: Rv0397A - Conserved protein, at 476,394 to 476,642
Rv0397A
Rv0398c: Rv0398c - Possible secreted protein, at 476,679 to 477,320
Rv0398c
Position (kb) 475
476 Strain fitness (log2 ratio) -2
-1
0
1
2 at 474.386 kb on - strand, within Rv0394c at 474.476 kb on - strand, within Rv0394c at 474.593 kb on - strand, within Rv0394c at 474.698 kb on + strand, within Rv0394c at 474.841 kb on + strand at 474.854 kb on - strand at 474.854 kb on - strand at 474.854 kb on - strand at 474.854 kb on - strand at 475.140 kb on + strand, within Rv0395 at 475.227 kb on + strand, within Rv0395 at 475.260 kb on - strand, within Rv0395 at 475.326 kb on - strand at 475.326 kb on - strand at 475.342 kb on + strand at 475.343 kb on - strand at 475.343 kb on - strand at 475.369 kb on + strand at 475.438 kb on - strand, within Rv0396 at 475.438 kb on - strand, within Rv0396 at 475.898 kb on - strand, within Rv0397 at 475.898 kb on - strand, within Rv0397 at 475.898 kb on - strand, within Rv0397 at 476.183 kb on - strand at 476.314 kb on + strand at 476.315 kb on - strand at 476.345 kb on + strand at 476.426 kb on - strand, within Rv0397A at 476.545 kb on + strand, within Rv0397A at 476.546 kb on - strand, within Rv0397A at 476.547 kb on + strand, within Rv0397A at 476.547 kb on + strand, within Rv0397A at 476.681 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Levofloxacin 0.3 ug/mL remove 474,386 - Rv0394c 0.37 +0.7 474,476 - Rv0394c 0.49 -1.3 474,593 - Rv0394c 0.65 -0.4 474,698 + Rv0394c 0.80 -1.3 474,841 + -0.5 474,854 - -0.5 474,854 - -0.7 474,854 - +0.5 474,854 - -0.8 475,140 + Rv0395 0.49 +0.1 475,227 + Rv0395 0.71 -0.6 475,260 - Rv0395 0.79 -1.8 475,326 - +0.0 475,326 - -0.2 475,342 + -0.4 475,343 - -0.4 475,343 - +0.9 475,369 + +0.4 475,438 - Rv0396 0.22 -0.3 475,438 - Rv0396 0.22 -1.6 475,898 - Rv0397 0.22 -0.5 475,898 - Rv0397 0.22 -0.9 475,898 - Rv0397 0.22 +0.1 476,183 - +2.0 476,314 + +0.1 476,315 - -1.2 476,345 + +0.2 476,426 - Rv0397A 0.13 -0.5 476,545 + Rv0397A 0.61 -0.9 476,546 - Rv0397A 0.61 -0.2 476,547 + Rv0397A 0.61 -1.3 476,547 + Rv0397A 0.61 +2.3 476,681 - +0.6
Or see this region's nucleotide sequence