Experiment: 7H9 with Levofloxacin 0.3 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0391 and Rv0392c overlap by 4 nucleotides Rv0392c and Rv0393 are separated by 141 nucleotides
Rv0391: Rv0391 - Probable O-succinylhomoserine sulfhydrylase MetZ (OSH sulfhydrylase), at 470,010 to 471,230
Rv0391
Rv0392c: Rv0392c - Probable membrane NADH dehydrogenase NdhA, at 471,227 to 472,639
Rv0392c
Rv0393: Rv0393 - Conserved 13E12 repeat family protein, at 472,781 to 474,106
Rv0393
Position (kb) 471
472
473 Strain fitness (log2 ratio) -2
-1
0
1 at 470.721 kb on + strand, within Rv0391 at 470.929 kb on - strand, within Rv0391 at 471.228 kb on + strand at 471.325 kb on - strand at 472.037 kb on - strand, within Rv0392c at 472.474 kb on - strand, within Rv0392c at 472.541 kb on - strand at 472.673 kb on + strand at 472.674 kb on - strand at 472.674 kb on - strand at 472.681 kb on - strand at 472.706 kb on - strand at 472.854 kb on + strand at 472.854 kb on + strand at 472.855 kb on - strand at 472.855 kb on - strand at 472.894 kb on - strand at 472.992 kb on + strand, within Rv0393 at 473.103 kb on + strand, within Rv0393 at 473.104 kb on - strand, within Rv0393 at 473.213 kb on + strand, within Rv0393 at 473.214 kb on - strand, within Rv0393 at 473.214 kb on - strand, within Rv0393 at 473.225 kb on + strand, within Rv0393 at 473.225 kb on + strand, within Rv0393 at 473.225 kb on + strand, within Rv0393 at 473.226 kb on - strand, within Rv0393
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Levofloxacin 0.3 ug/mL remove 470,721 + Rv0391 0.58 +0.5 470,929 - Rv0391 0.75 +0.4 471,228 + -0.1 471,325 - -0.6 472,037 - Rv0392c 0.57 -2.2 472,474 - Rv0392c 0.88 -0.7 472,541 - -1.4 472,673 + -0.4 472,674 - +0.0 472,674 - +0.3 472,681 - -0.7 472,706 - -2.0 472,854 + -1.6 472,854 + -0.3 472,855 - -0.6 472,855 - +0.1 472,894 - -0.0 472,992 + Rv0393 0.16 -0.8 473,103 + Rv0393 0.24 -0.7 473,104 - Rv0393 0.24 -1.1 473,213 + Rv0393 0.33 -0.1 473,214 - Rv0393 0.33 -0.6 473,214 - Rv0393 0.33 -0.2 473,225 + Rv0393 0.33 +0.2 473,225 + Rv0393 0.33 -1.3 473,225 + Rv0393 0.33 -0.3 473,226 - Rv0393 0.34 -0.2
Or see this region's nucleotide sequence