Experiment: 7H9 with Levofloxacin 0.3 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0271c and Rv0272c are separated by 113 nucleotides Rv0272c and Rv0273c overlap by 4 nucleotides Rv0273c and Rv0274 are separated by 96 nucleotides
Rv0271c: Rv0271c - Probable acyl-CoA dehydrogenase FadE6, at 326,266 to 328,461
Rv0271c
Rv0272c: Rv0272c - Unknown protein, at 328,575 to 329,708
Rv0272c
Rv0273c: Rv0273c - Possible transcriptional regulatory protein, at 329,705 to 330,325
Rv0273c
Rv0274: Rv0274 - Conserved protein, at 330,422 to 331,003
Rv0274
Position (kb) 328
329
330 Strain fitness (log2 ratio) -1
0
1
2
3 at 327.755 kb on + strand, within Rv0271c at 327.755 kb on + strand, within Rv0271c at 327.755 kb on + strand, within Rv0271c at 327.756 kb on - strand, within Rv0271c at 327.964 kb on + strand, within Rv0271c at 327.965 kb on - strand, within Rv0271c at 327.965 kb on - strand, within Rv0271c at 328.000 kb on + strand, within Rv0271c at 328.099 kb on + strand, within Rv0271c at 328.100 kb on - strand, within Rv0271c at 328.249 kb on + strand at 328.433 kb on + strand at 328.434 kb on - strand at 328.449 kb on + strand at 328.450 kb on - strand at 328.648 kb on + strand at 328.703 kb on - strand, within Rv0272c at 328.970 kb on + strand, within Rv0272c at 329.239 kb on + strand, within Rv0272c at 329.240 kb on - strand, within Rv0272c at 329.285 kb on + strand, within Rv0272c at 329.515 kb on + strand, within Rv0272c at 329.551 kb on + strand, within Rv0272c at 329.602 kb on + strand at 329.602 kb on + strand at 329.603 kb on - strand at 329.731 kb on - strand at 329.807 kb on - strand, within Rv0273c at 330.036 kb on + strand, within Rv0273c at 330.175 kb on - strand, within Rv0273c at 330.180 kb on + strand, within Rv0273c at 330.180 kb on + strand, within Rv0273c
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Levofloxacin 0.3 ug/mL remove 327,755 + Rv0271c 0.68 -0.5 327,755 + Rv0271c 0.68 -0.5 327,755 + Rv0271c 0.68 -0.1 327,756 - Rv0271c 0.68 -0.9 327,964 + Rv0271c 0.77 +0.6 327,965 - Rv0271c 0.77 -0.1 327,965 - Rv0271c 0.77 -0.7 328,000 + Rv0271c 0.79 +0.2 328,099 + Rv0271c 0.83 +0.3 328,100 - Rv0271c 0.84 -0.3 328,249 + -0.3 328,433 + +0.7 328,434 - -0.2 328,449 + -0.2 328,450 - -0.8 328,648 + -0.5 328,703 - Rv0272c 0.11 -0.8 328,970 + Rv0272c 0.35 +0.6 329,239 + Rv0272c 0.59 +0.2 329,240 - Rv0272c 0.59 +0.4 329,285 + Rv0272c 0.63 -0.0 329,515 + Rv0272c 0.83 +2.0 329,551 + Rv0272c 0.86 +0.3 329,602 + -1.1 329,602 + +0.3 329,603 - -0.7 329,731 - +3.0 329,807 - Rv0273c 0.16 -1.0 330,036 + Rv0273c 0.53 -0.3 330,175 - Rv0273c 0.76 -1.5 330,180 + Rv0273c 0.76 +1.1 330,180 + Rv0273c 0.76 +0.7
Or see this region's nucleotide sequence