Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv0754

Experiment: 7H9 with Moxifloxacin 0.121 ug/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRv0753c and Rv0754 are separated by 205 nucleotidesRv0754 and Rv0755c are separated by 189 nucleotides Rv0753c: Rv0753c - Probable methylmalonate-semialdehyde dehydrogenase MmsA (methylmalonic acid semialdehyde dehydrogenase) (MMSDH), at 844,421 to 845,953 Rv0753c Rv0754: Rv0754 - PE-PGRS family protein PE_PGRS11, at 846,159 to 847,913 Rv0754 Rv0755c: Rv0755c - PPE family protein PPE12, at 848,103 to 850,040 Rv0755c Position (kb) 846 847 848Strain fitness (log2 ratio) -1 0 1 2 3at 845.250 kb on + strand, within Rv0753cat 845.257 kb on - strand, within Rv0753cat 845.257 kb on - strand, within Rv0753cat 845.550 kb on + strand, within Rv0753cat 845.551 kb on - strand, within Rv0753cat 845.583 kb on + strand, within Rv0753cat 846.054 kb on + strandat 846.131 kb on - strandat 846.133 kb on + strandat 846.133 kb on + strandat 846.133 kb on + strandat 846.153 kb on + strandat 846.298 kb on + strandat 846.417 kb on + strand, within Rv0754at 846.417 kb on + strand, within Rv0754at 846.417 kb on + strand, within Rv0754at 846.417 kb on + strand, within Rv0754at 846.417 kb on + strand, within Rv0754at 846.418 kb on - strand, within Rv0754at 846.418 kb on - strand, within Rv0754at 846.418 kb on - strand, within Rv0754at 846.511 kb on - strand, within Rv0754at 847.150 kb on - strand, within Rv0754at 847.234 kb on + strand, within Rv0754at 847.308 kb on + strand, within Rv0754at 847.308 kb on + strand, within Rv0754at 847.308 kb on + strand, within Rv0754at 847.309 kb on - strand, within Rv0754at 847.309 kb on - strand, within Rv0754at 847.409 kb on + strand, within Rv0754at 847.431 kb on + strand, within Rv0754at 847.431 kb on + strand, within Rv0754at 847.491 kb on + strand, within Rv0754at 847.491 kb on + strand, within Rv0754at 847.491 kb on + strand, within Rv0754at 847.598 kb on - strand, within Rv0754at 847.725 kb on + strand, within Rv0754at 847.725 kb on + strand, within Rv0754at 847.869 kb on + strandat 847.870 kb on - strandat 847.873 kb on + strandat 847.873 kb on + strandat 847.874 kb on - strandat 847.874 kb on - strandat 847.874 kb on - strandat 847.928 kb on + strandat 847.928 kb on + strandat 847.928 kb on + strandat 847.929 kb on - strandat 847.929 kb on - strandat 847.929 kb on - strandat 848.094 kb on + strandat 848.095 kb on - strandat 848.100 kb on + strandat 848.142 kb on - strandat 848.820 kb on + strand, within Rv0755cat 848.820 kb on + strand, within Rv0755cat 848.820 kb on + strand, within Rv0755c

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 7H9 with Moxifloxacin 0.121 ug/mL
remove
845,250 + Rv0753c 0.54 -0.6
845,257 - Rv0753c 0.55 -0.4
845,257 - Rv0753c 0.55 -0.4
845,550 + Rv0753c 0.74 -0.4
845,551 - Rv0753c 0.74 -0.8
845,583 + Rv0753c 0.76 -0.1
846,054 + -1.2
846,131 - -0.7
846,133 + -0.6
846,133 + -0.4
846,133 + +0.1
846,153 + +1.5
846,298 + +1.2
846,417 + Rv0754 0.15 +0.7
846,417 + Rv0754 0.15 -0.0
846,417 + Rv0754 0.15 -0.8
846,417 + Rv0754 0.15 -0.2
846,417 + Rv0754 0.15 +0.1
846,418 - Rv0754 0.15 +0.6
846,418 - Rv0754 0.15 +1.2
846,418 - Rv0754 0.15 +1.0
846,511 - Rv0754 0.20 -0.0
847,150 - Rv0754 0.56 +1.2
847,234 + Rv0754 0.61 +0.6
847,308 + Rv0754 0.65 -0.4
847,308 + Rv0754 0.65 -1.0
847,308 + Rv0754 0.65 +2.2
847,309 - Rv0754 0.66 -0.1
847,309 - Rv0754 0.66 -0.4
847,409 + Rv0754 0.71 -0.6
847,431 + Rv0754 0.72 +1.8
847,431 + Rv0754 0.72 -1.0
847,491 + Rv0754 0.76 -1.1
847,491 + Rv0754 0.76 -0.8
847,491 + Rv0754 0.76 +0.4
847,598 - Rv0754 0.82 +0.7
847,725 + Rv0754 0.89 +0.3
847,725 + Rv0754 0.89 +1.2
847,869 + +0.5
847,870 - -0.4
847,873 + +0.4
847,873 + +3.2
847,874 - -1.5
847,874 - -0.4
847,874 - +3.2
847,928 + +0.6
847,928 + -0.3
847,928 + +0.2
847,929 - -0.2
847,929 - +2.2
847,929 - -1.3
848,094 + -0.1
848,095 - -0.9
848,100 + -0.1
848,142 - -0.8
848,820 + Rv0755c 0.37 +0.6
848,820 + Rv0755c 0.37 -0.5
848,820 + Rv0755c 0.37 +0.2

Or see this region's nucleotide sequence