Experiment: 7H9 with Moxifloxacin 0.121 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv3558 and Rv3559c are separated by 8 nucleotides Rv3559c and Rv3560c overlap by 4 nucleotides Rv3560c and Rv3561 are separated by 47 nucleotides
Rv3558: Rv3558 - PPE family protein PPE64, at 3,997,980 to 3,999,638
Rv3558
Rv3559c: Rv3559c - Probable oxidoreductase, at 3,999,647 to 4,000,435
Rv3559c
Rv3560c: Rv3560c - Probable acyl-CoA dehydrogenase FadE30, at 4,000,432 to 4,001,589
Rv3560c
Rv3561: Rv3561 - Probable fatty-acid-CoA ligase FadD3 (fatty-acid-CoA synthetase) (fatty-acid-CoA synthase), at 4,001,637 to 4,003,160
Rv3561
Position (kb) 4000
4001
4002 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 3999.445 kb on + strand, within Rv3558 at 3999.585 kb on - strand at 4000.012 kb on - strand, within Rv3559c at 4000.012 kb on - strand, within Rv3559c at 4000.535 kb on + strand at 4000.535 kb on + strand at 4000.536 kb on - strand at 4000.536 kb on - strand at 4000.536 kb on - strand at 4000.707 kb on - strand, within Rv3560c at 4001.031 kb on - strand, within Rv3560c at 4001.132 kb on - strand, within Rv3560c at 4001.208 kb on - strand, within Rv3560c at 4001.352 kb on - strand, within Rv3560c at 4001.352 kb on - strand, within Rv3560c at 4001.352 kb on - strand, within Rv3560c at 4001.512 kb on - strand at 4001.512 kb on - strand at 4001.512 kb on - strand at 4001.596 kb on + strand at 4001.904 kb on + strand, within Rv3561 at 4001.905 kb on - strand, within Rv3561 at 4002.273 kb on + strand, within Rv3561 at 4002.274 kb on - strand, within Rv3561 at 4002.274 kb on - strand, within Rv3561 at 4002.309 kb on + strand, within Rv3561
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Moxifloxacin 0.121 ug/mL remove 3,999,445 + Rv3558 0.88 +0.4 3,999,585 - -1.0 4,000,012 - Rv3559c 0.46 +0.2 4,000,012 - Rv3559c 0.46 +0.5 4,000,535 + +1.0 4,000,535 + -2.8 4,000,536 - +0.4 4,000,536 - +0.4 4,000,536 - -0.5 4,000,707 - Rv3560c 0.24 -1.0 4,001,031 - Rv3560c 0.52 +1.1 4,001,132 - Rv3560c 0.60 +2.7 4,001,208 - Rv3560c 0.67 +1.1 4,001,352 - Rv3560c 0.79 -0.0 4,001,352 - Rv3560c 0.79 -0.4 4,001,352 - Rv3560c 0.79 +1.1 4,001,512 - -0.4 4,001,512 - -1.0 4,001,512 - -0.9 4,001,596 + -1.5 4,001,904 + Rv3561 0.18 +0.0 4,001,905 - Rv3561 0.18 -2.0 4,002,273 + Rv3561 0.42 -0.2 4,002,274 - Rv3561 0.42 -0.6 4,002,274 - Rv3561 0.42 -0.4 4,002,309 + Rv3561 0.44 -0.1
Or see this region's nucleotide sequence