Experiment: 7H9 with Moxifloxacin 0.121 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv3412 and Rv3413c are separated by 9 nucleotides Rv3413c and Rv3414c overlap by 8 nucleotides Rv3414c and Rv3415c are separated by 17 nucleotides
Rv3412: Rv3412 - Conserved hypothetical protein, at 3,831,726 to 3,832,136
Rv3412
Rv3413c: Rv3413c - Unknown alanine and proline rich protein, at 3,832,146 to 3,833,045
Rv3413c
Rv3414c: Rv3414c - Probable alternative RNA polymerase sigma-D factor SigD, at 3,833,038 to 3,833,676
Rv3414c
Rv3415c: Rv3415c - Conserved hypothetical protein, at 3,833,694 to 3,834,521
Rv3415c
Position (kb)
3833
3834 Strain fitness (log2 ratio)
-1
0
1 at 3832.051 kb on - strand, within Rv3412 at 3832.484 kb on + strand, within Rv3413c at 3832.485 kb on - strand, within Rv3413c at 3833.045 kb on + strand at 3833.046 kb on - strand at 3833.310 kb on - strand, within Rv3414c at 3833.369 kb on + strand, within Rv3414c at 3833.422 kb on + strand, within Rv3414c at 3833.623 kb on + strand at 3833.658 kb on + strand at 3834.126 kb on + strand, within Rv3415c at 3834.126 kb on + strand, within Rv3415c at 3834.126 kb on + strand, within Rv3415c at 3834.126 kb on + strand, within Rv3415c at 3834.127 kb on - strand, within Rv3415c at 3834.296 kb on + strand, within Rv3415c at 3834.296 kb on + strand, within Rv3415c at 3834.296 kb on + strand, within Rv3415c at 3834.296 kb on + strand, within Rv3415c at 3834.296 kb on + strand, within Rv3415c at 3834.296 kb on + strand, within Rv3415c at 3834.296 kb on + strand, within Rv3415c at 3834.296 kb on + strand, within Rv3415c at 3834.361 kb on + strand, within Rv3415c at 3834.438 kb on + strand, within Rv3415c at 3834.649 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Moxifloxacin 0.121 ug/mL remove 3,832,051 - Rv3412 0.79 +1.6 3,832,484 + Rv3413c 0.38 -0.3 3,832,485 - Rv3413c 0.38 -0.5 3,833,045 + -0.0 3,833,046 - -0.5 3,833,310 - Rv3414c 0.43 -1.0 3,833,369 + Rv3414c 0.52 -0.4 3,833,422 + Rv3414c 0.60 -1.3 3,833,623 + -0.6 3,833,658 + -1.1 3,834,126 + Rv3415c 0.52 -1.4 3,834,126 + Rv3415c 0.52 -1.2 3,834,126 + Rv3415c 0.52 -0.1 3,834,126 + Rv3415c 0.52 -1.2 3,834,127 - Rv3415c 0.52 -0.1 3,834,296 + Rv3415c 0.73 -0.3 3,834,296 + Rv3415c 0.73 -0.6 3,834,296 + Rv3415c 0.73 -0.0 3,834,296 + Rv3415c 0.73 -0.7 3,834,296 + Rv3415c 0.73 -0.4 3,834,296 + Rv3415c 0.73 -0.7 3,834,296 + Rv3415c 0.73 -1.5 3,834,296 + Rv3415c 0.73 -0.2 3,834,361 + Rv3415c 0.81 -1.2 3,834,438 + Rv3415c 0.90 +0.5 3,834,649 + -0.0
Or see this region's nucleotide sequence