Experiment: 7H9 with Moxifloxacin 0.121 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0622 and Rv0623 are separated by 92 nucleotides Rv0623 and Rv0624 overlap by 1 nucleotides Rv0624 and Rv0625c are separated by 93 nucleotides Rv0625c and Rv0626 are separated by 131 nucleotides
Rv0622: Rv0622 - Possible membrane protein, at 715,370 to 716,317
Rv0622
Rv0623: Rv0623 - Possible antitoxin VapB30, at 716,410 to 716,664
Rv0623
Rv0624: Rv0624 - Possible toxin VapC30. Contains PIN domain., at 716,664 to 717,059
Rv0624
Rv0625c: Rv0625c - Probable conserved transmembrane protein, at 717,153 to 717,893
Rv0625c
Rv0626: Rv0626 - Possible antitoxin VapB5, at 718,025 to 718,285
Rv0626
Position (kb) 716
717
718 Strain fitness (log2 ratio) -1
0
1
2
3 at 715.796 kb on + strand, within Rv0622 at 715.797 kb on - strand, within Rv0622 at 716.231 kb on + strand at 716.232 kb on - strand at 716.422 kb on - strand at 716.422 kb on - strand at 716.638 kb on + strand, within Rv0623 at 716.639 kb on - strand at 716.797 kb on + strand, within Rv0624 at 716.798 kb on - strand, within Rv0624 at 716.919 kb on + strand, within Rv0624 at 716.920 kb on - strand, within Rv0624 at 716.952 kb on + strand, within Rv0624 at 716.953 kb on - strand, within Rv0624 at 716.970 kb on + strand, within Rv0624 at 716.971 kb on - strand, within Rv0624 at 717.057 kb on + strand at 717.058 kb on - strand at 717.058 kb on - strand at 717.064 kb on + strand at 717.428 kb on - strand, within Rv0625c at 717.428 kb on - strand, within Rv0625c at 717.718 kb on + strand, within Rv0625c at 717.719 kb on - strand, within Rv0625c at 717.719 kb on - strand, within Rv0625c at 717.802 kb on + strand, within Rv0625c at 717.803 kb on - strand, within Rv0625c at 717.803 kb on - strand, within Rv0625c at 717.813 kb on + strand, within Rv0625c at 717.813 kb on + strand, within Rv0625c at 718.001 kb on + strand at 718.020 kb on + strand at 718.054 kb on + strand, within Rv0626
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Moxifloxacin 0.121 ug/mL remove 715,796 + Rv0622 0.45 +0.2 715,797 - Rv0622 0.45 +1.6 716,231 + -0.7 716,232 - -0.8 716,422 - -0.3 716,422 - -0.5 716,638 + Rv0623 0.89 -0.9 716,639 - -1.2 716,797 + Rv0624 0.34 -0.0 716,798 - Rv0624 0.34 +3.2 716,919 + Rv0624 0.64 +3.0 716,920 - Rv0624 0.65 -0.3 716,952 + Rv0624 0.73 +0.7 716,953 - Rv0624 0.73 +0.3 716,970 + Rv0624 0.77 -0.7 716,971 - Rv0624 0.78 +0.3 717,057 + -0.1 717,058 - -0.9 717,058 - -1.4 717,064 + +0.2 717,428 - Rv0625c 0.37 -0.8 717,428 - Rv0625c 0.37 -0.5 717,718 + Rv0625c 0.76 -1.6 717,719 - Rv0625c 0.76 +0.7 717,719 - Rv0625c 0.76 -1.4 717,802 + Rv0625c 0.88 -0.4 717,803 - Rv0625c 0.88 +0.1 717,803 - Rv0625c 0.88 -1.3 717,813 + Rv0625c 0.89 -0.7 717,813 + Rv0625c 0.89 +1.1 718,001 + +1.2 718,020 + -0.6 718,054 + Rv0626 0.11 +0.2
Or see this region's nucleotide sequence