Experiment: 7H9 with Moxifloxacin 0.121 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0078A and Rv0078B overlap by 4 nucleotides Rv0078B and Rv0079 are separated by 199 nucleotides Rv0079 and Rv0080 overlap by 4 nucleotides Rv0080 and Rv0081 are separated by 94 nucleotides Rv0081 and Rv0082 are separated by 4 nucleotides
Rv0078A: Rv0078A - Hypothetical protein, at 87,208 to 87,801
Rv0078A
Rv0078B: Rv0078B - Conserved protein, at 87,798 to 88,004
Rv0078B
Rv0079: Rv0079 - Unknown protein, at 88,204 to 89,025
Rv0079
Rv0080: Rv0080 - Conserved hypothetical protein, at 89,022 to 89,480
Rv0080
Rv0081: Rv0081 - Probable transcriptional regulatory protein, at 89,575 to 89,919
Rv0081
Rv0082: Rv0082 - Probable oxidoreductase, at 89,924 to 90,403
Rv0082
Position (kb) 88
89
90 Strain fitness (log2 ratio) -2
-1
0
1
2 at 87.276 kb on + strand, within Rv0078A at 87.289 kb on - strand, within Rv0078A at 87.343 kb on + strand, within Rv0078A at 87.605 kb on + strand, within Rv0078A at 87.606 kb on - strand, within Rv0078A at 87.632 kb on - strand, within Rv0078A at 87.955 kb on + strand, within Rv0078B at 87.955 kb on + strand, within Rv0078B at 87.955 kb on + strand, within Rv0078B at 87.955 kb on + strand, within Rv0078B at 87.955 kb on + strand, within Rv0078B at 88.233 kb on - strand at 88.233 kb on - strand at 88.280 kb on + strand at 88.440 kb on - strand, within Rv0079 at 88.631 kb on + strand, within Rv0079 at 88.681 kb on + strand, within Rv0079 at 88.682 kb on - strand, within Rv0079 at 88.732 kb on + strand, within Rv0079 at 88.779 kb on - strand, within Rv0079 at 88.779 kb on - strand, within Rv0079 at 88.954 kb on + strand at 88.954 kb on + strand at 89.271 kb on + strand, within Rv0080 at 89.271 kb on + strand, within Rv0080 at 89.272 kb on - strand, within Rv0080 at 89.370 kb on + strand, within Rv0080 at 89.371 kb on - strand, within Rv0080 at 89.471 kb on + strand at 89.472 kb on - strand at 89.593 kb on + strand at 89.594 kb on - strand at 89.747 kb on + strand, within Rv0081 at 89.917 kb on + strand at 90.015 kb on + strand, within Rv0082
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Moxifloxacin 0.121 ug/mL remove 87,276 + Rv0078A 0.11 -0.4 87,289 - Rv0078A 0.14 -1.7 87,343 + Rv0078A 0.23 +0.1 87,605 + Rv0078A 0.67 -1.0 87,606 - Rv0078A 0.67 -0.2 87,632 - Rv0078A 0.71 -0.7 87,955 + Rv0078B 0.76 -1.3 87,955 + Rv0078B 0.76 -0.4 87,955 + Rv0078B 0.76 +0.3 87,955 + Rv0078B 0.76 -0.6 87,955 + Rv0078B 0.76 +0.0 88,233 - +0.6 88,233 - +2.0 88,280 + -1.9 88,440 - Rv0079 0.29 -1.9 88,631 + Rv0079 0.52 -1.0 88,681 + Rv0079 0.58 -2.6 88,682 - Rv0079 0.58 -0.3 88,732 + Rv0079 0.64 +0.6 88,779 - Rv0079 0.70 -1.7 88,779 - Rv0079 0.70 -1.6 88,954 + -0.7 88,954 + -0.4 89,271 + Rv0080 0.54 +0.2 89,271 + Rv0080 0.54 -0.1 89,272 - Rv0080 0.54 -0.3 89,370 + Rv0080 0.76 +0.9 89,371 - Rv0080 0.76 -0.3 89,471 + -1.2 89,472 - -1.4 89,593 + -1.4 89,594 - -0.0 89,747 + Rv0081 0.50 +0.5 89,917 + -0.1 90,015 + Rv0082 0.19 +0.8
Or see this region's nucleotide sequence