Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3591c

Experiment: no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRv3590c and Rv3591c are separated by 110 nucleotidesRv3591c and Rv3592 are separated by 14 nucleotidesRv3592 and Rv3593 overlap by 23 nucleotides Rv3590c: Rv3590c - PE-PGRS family protein PE_PGRS58, at 4,031,404 to 4,033,158 Rv3590c Rv3591c: Rv3591c - Possible hydrolase, at 4,033,269 to 4,034,042 Rv3591c Rv3592: Rv3592 - Possible heme degrading protein MhuD, at 4,034,057 to 4,034,374 Rv3592 Rv3593: Rv3593 - Probable conserved lipoprotein LpqF, at 4,034,352 to 4,035,710 Rv3593 Position (kb) 4033 4034 4035Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4032.812 kb on - strand, within Rv3590cat 4032.899 kb on + strand, within Rv3590cat 4032.899 kb on + strand, within Rv3590cat 4032.900 kb on - strand, within Rv3590cat 4032.975 kb on - strand, within Rv3590cat 4033.367 kb on - strand, within Rv3591cat 4033.458 kb on + strand, within Rv3591cat 4033.611 kb on + strand, within Rv3591cat 4033.918 kb on - strand, within Rv3591cat 4034.181 kb on + strand, within Rv3592at 4034.181 kb on + strand, within Rv3592at 4034.207 kb on + strand, within Rv3592

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
remove
4,032,812 - Rv3590c 0.80 -0.8
4,032,899 + Rv3590c 0.85 -0.4
4,032,899 + Rv3590c 0.85 +0.3
4,032,900 - Rv3590c 0.85 -0.4
4,032,975 - Rv3590c 0.90 -0.5
4,033,367 - Rv3591c 0.13 +2.5
4,033,458 + Rv3591c 0.24 +3.4
4,033,611 + Rv3591c 0.44 +0.5
4,033,918 - Rv3591c 0.84 -0.4
4,034,181 + Rv3592 0.39 -3.1
4,034,181 + Rv3592 0.39 -0.7
4,034,207 + Rv3592 0.47 -1.7

Or see this region's nucleotide sequence