Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv2837c

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRv2836c and Rv2837c are separated by 6 nucleotidesRv2837c and Rv2838c overlap by 26 nucleotidesRv2838c and Rv2839c overlap by 1 nucleotides Rv2836c: Rv2836c - Possible DNA-damage-inducible protein F DinF, at 3,142,309 to 3,143,628 Rv2836c Rv2837c: Rv2837c - Conserved protein, at 3,143,635 to 3,144,645 Rv2837c Rv2838c: Rv2838c - Probable ribosome-binding factor a RbfA (P15B protein), at 3,144,620 to 3,145,171 Rv2838c Rv2839c: Rv2839c - Probable translation initiation factor if-2 InfB, at 3,145,171 to 3,147,873 Rv2839c Position (kb) 3143 3144 3145Strain fitness (log2 ratio) -1 0 1 2at 3143.084 kb on + strand, within Rv2836cat 3143.356 kb on + strand, within Rv2836cat 3143.357 kb on - strand, within Rv2836cat 3143.540 kb on + strandat 3143.540 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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3,143,084 + Rv2836c 0.59 +0.7
3,143,356 + Rv2836c 0.79 -1.2
3,143,357 - Rv2836c 0.79 -0.9
3,143,540 + +2.2
3,143,540 + +1.2

Or see this region's nucleotide sequence