Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0845 and Rv0846c are separated by 212 nucleotides Rv0846c and Rv0847 are separated by 148 nucleotides Rv0847 and Rv0848 are separated by 202 nucleotides
Rv0845: Rv0845 - Possible two component sensor kinase, at 941,190 to 942,467
Rv0845
Rv0846c: Rv0846c - Probable oxidase, at 942,680 to 944,194
Rv0846c
Rv0847: Rv0847 - Probable lipoprotein LpqS, at 944,343 to 944,735
Rv0847
Rv0848: Rv0848 - Possible cysteine synthase a CysK2 (O-acetylserine sulfhydrylase) (O-acetylserine (thiol)-lyase) (CSASE), at 944,938 to 946,056
Rv0848
Position (kb) 942
943
944
945 Strain fitness (log2 ratio) -2
-1
0
1 at 941.757 kb on + strand, within Rv0845 at 941.810 kb on + strand, within Rv0845 at 942.097 kb on + strand, within Rv0845 at 942.116 kb on + strand, within Rv0845 at 942.167 kb on - strand, within Rv0845 at 942.862 kb on + strand, within Rv0846c at 942.889 kb on - strand, within Rv0846c at 942.889 kb on - strand, within Rv0846c at 943.239 kb on + strand, within Rv0846c at 943.446 kb on + strand, within Rv0846c at 943.449 kb on + strand, within Rv0846c at 943.516 kb on + strand, within Rv0846c at 943.677 kb on + strand, within Rv0846c at 943.678 kb on - strand, within Rv0846c at 943.679 kb on + strand, within Rv0846c at 943.679 kb on + strand, within Rv0846c at 943.722 kb on + strand, within Rv0846c at 943.723 kb on - strand, within Rv0846c at 943.756 kb on + strand, within Rv0846c at 943.756 kb on + strand, within Rv0846c at 943.933 kb on - strand, within Rv0846c at 944.232 kb on - strand at 944.313 kb on + strand at 944.314 kb on - strand at 944.473 kb on + strand, within Rv0847 at 944.473 kb on + strand, within Rv0847 at 944.473 kb on + strand, within Rv0847 at 944.587 kb on + strand, within Rv0847 at 944.590 kb on + strand, within Rv0847 at 944.591 kb on - strand, within Rv0847 at 944.591 kb on - strand, within Rv0847 at 944.841 kb on + strand at 944.841 kb on + strand at 944.906 kb on + strand at 944.907 kb on - strand at 945.104 kb on + strand, within Rv0848 at 945.126 kb on + strand, within Rv0848
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 941,757 + Rv0845 0.44 -0.8 941,810 + Rv0845 0.49 -2.0 942,097 + Rv0845 0.71 +1.0 942,116 + Rv0845 0.72 +0.2 942,167 - Rv0845 0.76 -0.2 942,862 + Rv0846c 0.12 -0.5 942,889 - Rv0846c 0.14 -1.0 942,889 - Rv0846c 0.14 -0.7 943,239 + Rv0846c 0.37 +1.1 943,446 + Rv0846c 0.51 -1.6 943,449 + Rv0846c 0.51 +0.4 943,516 + Rv0846c 0.55 +0.5 943,677 + Rv0846c 0.66 -0.4 943,678 - Rv0846c 0.66 +0.1 943,679 + Rv0846c 0.66 -0.8 943,679 + Rv0846c 0.66 +0.3 943,722 + Rv0846c 0.69 -0.6 943,723 - Rv0846c 0.69 -0.3 943,756 + Rv0846c 0.71 -0.3 943,756 + Rv0846c 0.71 -2.0 943,933 - Rv0846c 0.83 -1.6 944,232 - -0.2 944,313 + +0.3 944,314 - -0.7 944,473 + Rv0847 0.33 +0.0 944,473 + Rv0847 0.33 +1.6 944,473 + Rv0847 0.33 +1.2 944,587 + Rv0847 0.62 -1.0 944,590 + Rv0847 0.63 -0.2 944,591 - Rv0847 0.63 -0.2 944,591 - Rv0847 0.63 -0.2 944,841 + -1.1 944,841 + -0.9 944,906 + -0.9 944,907 - -0.0 945,104 + Rv0848 0.15 +1.3 945,126 + Rv0848 0.17 -0.0
Or see this region's nucleotide sequence