Strain Fitness in Erwinia tracheiphila HP pepo 2.2 around IJEDHG_01635

Experiment: HBM-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpncC and mltB are separated by 664 nucleotidesmltB and IJEDHG_01640 are separated by 415 nucleotides IJEDHG_01630: pncC - nicotinamide-nucleotide amidase, at 196,303 to 196,803 pncC IJEDHG_01635: mltB - lytic murein transglycosylase B, at 197,468 to 198,349 mltB IJEDHG_01640: IJEDHG_01640 - Thiamine biosynthesis protein ThiJ, at 198,765 to 199,355 _01640 Position (kb) 197 198 199Strain fitness (log2 ratio) -2 -1 0 1 2at 196.574 kb on + strand, within pncCat 196.574 kb on + strand, within pncCat 196.631 kb on + strand, within pncCat 196.632 kb on - strand, within pncCat 196.776 kb on + strandat 196.897 kb on + strandat 196.900 kb on + strandat 196.901 kb on - strandat 196.904 kb on + strandat 196.904 kb on + strandat 196.909 kb on - strandat 196.922 kb on + strandat 196.927 kb on + strandat 197.049 kb on + strandat 197.052 kb on + strandat 197.106 kb on + strandat 197.132 kb on - strandat 197.305 kb on + strandat 197.306 kb on - strandat 197.415 kb on + strandat 197.418 kb on + strandat 197.540 kb on - strandat 197.549 kb on - strandat 197.587 kb on - strand, within mltBat 197.589 kb on + strand, within mltBat 197.589 kb on + strand, within mltBat 197.590 kb on - strand, within mltBat 197.643 kb on - strand, within mltBat 197.684 kb on - strand, within mltBat 197.779 kb on - strand, within mltBat 197.789 kb on - strand, within mltBat 197.840 kb on - strand, within mltBat 197.861 kb on - strand, within mltBat 197.863 kb on - strand, within mltBat 197.875 kb on + strand, within mltBat 197.875 kb on + strand, within mltBat 197.876 kb on - strand, within mltBat 197.983 kb on - strand, within mltBat 198.031 kb on + strand, within mltBat 198.032 kb on - strand, within mltBat 198.421 kb on - strandat 198.571 kb on + strandat 198.572 kb on - strandat 198.574 kb on + strandat 198.587 kb on + strandat 198.630 kb on + strandat 198.638 kb on + strandat 198.638 kb on + strandat 198.639 kb on - strandat 198.735 kb on + strandat 198.821 kb on + strandat 198.824 kb on + strand, within IJEDHG_01640at 198.900 kb on + strand, within IJEDHG_01640at 198.900 kb on + strand, within IJEDHG_01640at 198.900 kb on + strand, within IJEDHG_01640at 198.932 kb on - strand, within IJEDHG_01640at 198.935 kb on - strand, within IJEDHG_01640at 198.955 kb on + strand, within IJEDHG_01640at 198.955 kb on + strand, within IJEDHG_01640at 198.955 kb on + strand, within IJEDHG_01640at 198.956 kb on - strand, within IJEDHG_01640at 198.956 kb on - strand, within IJEDHG_01640at 198.956 kb on - strand, within IJEDHG_01640at 199.032 kb on - strand, within IJEDHG_01640at 199.064 kb on - strand, within IJEDHG_01640at 199.149 kb on + strand, within IJEDHG_01640at 199.149 kb on + strand, within IJEDHG_01640at 199.150 kb on - strand, within IJEDHG_01640at 199.150 kb on - strand, within IJEDHG_01640at 199.152 kb on - strand, within IJEDHG_01640at 199.268 kb on - strand, within IJEDHG_01640at 199.312 kb on - strandat 199.331 kb on + strandat 199.340 kb on + strandat 199.340 kb on + strandat 199.340 kb on + strandat 199.340 kb on + strandat 199.341 kb on - strandat 199.342 kb on + strandat 199.342 kb on + strandat 199.343 kb on - strandat 199.343 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction HBM-Glucose
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196,574 + pncC IJEDHG_01630 0.54 -0.3
196,574 + pncC IJEDHG_01630 0.54 -2.4
196,631 + pncC IJEDHG_01630 0.65 +0.8
196,632 - pncC IJEDHG_01630 0.66 -0.6
196,776 + -1.7
196,897 + -0.1
196,900 + +0.5
196,901 - +0.0
196,904 + -0.5
196,904 + -0.9
196,909 - +0.1
196,922 + +0.4
196,927 + +0.1
197,049 + -0.7
197,052 + +0.2
197,106 + -0.3
197,132 - +0.5
197,305 + +0.2
197,306 - +0.2
197,415 + -0.2
197,418 + +0.1
197,540 - -0.4
197,549 - -0.6
197,587 - mltB IJEDHG_01635 0.13 +0.7
197,589 + mltB IJEDHG_01635 0.14 +0.9
197,589 + mltB IJEDHG_01635 0.14 -1.0
197,590 - mltB IJEDHG_01635 0.14 -0.0
197,643 - mltB IJEDHG_01635 0.20 +0.1
197,684 - mltB IJEDHG_01635 0.24 +0.4
197,779 - mltB IJEDHG_01635 0.35 -0.2
197,789 - mltB IJEDHG_01635 0.36 -0.8
197,840 - mltB IJEDHG_01635 0.42 +0.3
197,861 - mltB IJEDHG_01635 0.45 -1.0
197,863 - mltB IJEDHG_01635 0.45 -0.3
197,875 + mltB IJEDHG_01635 0.46 -0.9
197,875 + mltB IJEDHG_01635 0.46 -0.3
197,876 - mltB IJEDHG_01635 0.46 +0.1
197,983 - mltB IJEDHG_01635 0.58 -0.3
198,031 + mltB IJEDHG_01635 0.64 -0.0
198,032 - mltB IJEDHG_01635 0.64 -0.7
198,421 - +0.0
198,571 + +0.2
198,572 - -0.4
198,574 + -0.7
198,587 + -0.3
198,630 + +0.3
198,638 + -0.1
198,638 + +0.1
198,639 - -0.1
198,735 + -0.6
198,821 + +0.4
198,824 + IJEDHG_01640 0.10 -0.1
198,900 + IJEDHG_01640 0.23 +1.4
198,900 + IJEDHG_01640 0.23 +0.1
198,900 + IJEDHG_01640 0.23 +0.5
198,932 - IJEDHG_01640 0.28 -0.1
198,935 - IJEDHG_01640 0.29 +0.7
198,955 + IJEDHG_01640 0.32 +0.1
198,955 + IJEDHG_01640 0.32 +0.4
198,955 + IJEDHG_01640 0.32 -1.2
198,956 - IJEDHG_01640 0.32 +0.9
198,956 - IJEDHG_01640 0.32 +0.6
198,956 - IJEDHG_01640 0.32 +0.9
199,032 - IJEDHG_01640 0.45 -0.9
199,064 - IJEDHG_01640 0.51 -0.4
199,149 + IJEDHG_01640 0.65 +0.6
199,149 + IJEDHG_01640 0.65 +1.8
199,150 - IJEDHG_01640 0.65 +0.4
199,150 - IJEDHG_01640 0.65 +0.5
199,152 - IJEDHG_01640 0.65 +0.3
199,268 - IJEDHG_01640 0.85 +0.3
199,312 - -0.1
199,331 + +0.2
199,340 + -0.1
199,340 + +0.3
199,340 + +0.4
199,340 + +0.3
199,341 - +0.1
199,342 + +0.1
199,342 + -0.4
199,343 - -1.2
199,343 - -0.2

Or see this region's nucleotide sequence