Experiment: HBM-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt motB and motA overlap by 4 nucleotides motA and flhC are separated by 131 nucleotides flhC and flhD overlap by 1 nucleotides
IJEDHG_24405: motB - flagellar motor protein MotB, at 4,216,520 to 4,217,560
motB
IJEDHG_24410: motA - flagellar motor stator protein MotA, at 4,217,557 to 4,218,444
motA
IJEDHG_24415: flhC - flagellar transcriptional regulator FlhC, at 4,218,576 to 4,219,154
flhC
IJEDHG_24420: flhD - flagellar transcriptional regulator FlhD, at 4,219,154 to 4,219,507
flhD
Position (kb) 4217
4218
4219 Strain fitness (log2 ratio) -1
0
1 at 4216.597 kb on + strand at 4216.598 kb on - strand at 4216.598 kb on - strand at 4216.640 kb on - strand, within motB at 4216.673 kb on + strand, within motB at 4216.854 kb on - strand, within motB at 4216.959 kb on + strand, within motB at 4217.003 kb on + strand, within motB at 4217.003 kb on + strand, within motB at 4217.049 kb on + strand, within motB at 4217.049 kb on + strand, within motB at 4217.050 kb on - strand, within motB at 4217.117 kb on + strand, within motB at 4217.184 kb on - strand, within motB at 4217.335 kb on + strand, within motB at 4217.473 kb on - strand at 4217.473 kb on - strand at 4217.540 kb on - strand at 4217.551 kb on + strand at 4217.788 kb on - strand, within motA at 4217.788 kb on - strand, within motA at 4217.825 kb on - strand, within motA at 4217.886 kb on + strand, within motA at 4218.055 kb on + strand, within motA at 4218.055 kb on + strand, within motA at 4218.060 kb on - strand, within motA at 4218.221 kb on + strand, within motA at 4218.222 kb on - strand, within motA at 4218.222 kb on - strand, within motA at 4218.235 kb on - strand, within motA at 4218.236 kb on + strand, within motA at 4218.236 kb on + strand, within motA at 4218.236 kb on + strand, within motA at 4218.237 kb on - strand, within motA at 4218.336 kb on + strand, within motA at 4218.401 kb on - strand at 4218.425 kb on + strand at 4218.436 kb on - strand at 4218.455 kb on + strand at 4218.638 kb on + strand, within flhC at 4218.867 kb on - strand, within flhC at 4218.944 kb on + strand, within flhC at 4218.996 kb on - strand, within flhC at 4219.024 kb on + strand, within flhC at 4219.025 kb on - strand, within flhC at 4219.025 kb on - strand, within flhC at 4219.025 kb on - strand, within flhC at 4219.098 kb on + strand at 4219.099 kb on - strand at 4219.208 kb on + strand, within flhD at 4219.208 kb on + strand, within flhD
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-Glucose remove 4,216,597 + +0.9 4,216,598 - +0.2 4,216,598 - -0.4 4,216,640 - motB IJEDHG_24405 0.12 +0.2 4,216,673 + motB IJEDHG_24405 0.15 +0.9 4,216,854 - motB IJEDHG_24405 0.32 +0.0 4,216,959 + motB IJEDHG_24405 0.42 -0.5 4,217,003 + motB IJEDHG_24405 0.46 +0.2 4,217,003 + motB IJEDHG_24405 0.46 -0.1 4,217,049 + motB IJEDHG_24405 0.51 +0.8 4,217,049 + motB IJEDHG_24405 0.51 +0.4 4,217,050 - motB IJEDHG_24405 0.51 -0.7 4,217,117 + motB IJEDHG_24405 0.57 +0.6 4,217,184 - motB IJEDHG_24405 0.64 -0.4 4,217,335 + motB IJEDHG_24405 0.78 +0.6 4,217,473 - +0.7 4,217,473 - +0.3 4,217,540 - -0.1 4,217,551 + -0.2 4,217,788 - motA IJEDHG_24410 0.26 -0.8 4,217,788 - motA IJEDHG_24410 0.26 +0.2 4,217,825 - motA IJEDHG_24410 0.30 +0.1 4,217,886 + motA IJEDHG_24410 0.37 -1.3 4,218,055 + motA IJEDHG_24410 0.56 -0.7 4,218,055 + motA IJEDHG_24410 0.56 -0.3 4,218,060 - motA IJEDHG_24410 0.57 -0.1 4,218,221 + motA IJEDHG_24410 0.75 +0.7 4,218,222 - motA IJEDHG_24410 0.75 +0.1 4,218,222 - motA IJEDHG_24410 0.75 -0.3 4,218,235 - motA IJEDHG_24410 0.76 -0.0 4,218,236 + motA IJEDHG_24410 0.76 -0.8 4,218,236 + motA IJEDHG_24410 0.76 +1.0 4,218,236 + motA IJEDHG_24410 0.76 -0.4 4,218,237 - motA IJEDHG_24410 0.77 -0.0 4,218,336 + motA IJEDHG_24410 0.88 +0.3 4,218,401 - -0.8 4,218,425 + +0.2 4,218,436 - +1.4 4,218,455 + -0.2 4,218,638 + flhC IJEDHG_24415 0.11 +0.8 4,218,867 - flhC IJEDHG_24415 0.50 +1.1 4,218,944 + flhC IJEDHG_24415 0.64 -0.6 4,218,996 - flhC IJEDHG_24415 0.73 +0.0 4,219,024 + flhC IJEDHG_24415 0.77 -0.6 4,219,025 - flhC IJEDHG_24415 0.78 -0.2 4,219,025 - flhC IJEDHG_24415 0.78 +0.1 4,219,025 - flhC IJEDHG_24415 0.78 +1.6 4,219,098 + +0.4 4,219,099 - -0.2 4,219,208 + flhD IJEDHG_24420 0.15 +0.5 4,219,208 + flhD IJEDHG_24420 0.15 +0.7
Or see this region's nucleotide sequence