Experiment: HBM-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt arnB and IJEDHG_02610 are separated by 600 nucleotides IJEDHG_02610 and IJEDHG_02615 are separated by 177 nucleotides
IJEDHG_02605: arnB - UDP-4-amino-4-deoxy-L-arabinose aminotransferase, at 360,161 to 361,312
arnB
IJEDHG_02610: IJEDHG_02610 - hypothetical protein, at 361,913 to 362,050
_02610
IJEDHG_02615: IJEDHG_02615 - ABC-type xenobiotic transporter, at 362,228 to 364,351
_02615
Position (kb) 361
362
363 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 360.924 kb on + strand, within arnB at 360.924 kb on + strand, within arnB at 360.925 kb on - strand, within arnB at 360.925 kb on - strand, within arnB at 360.925 kb on - strand, within arnB at 360.929 kb on + strand, within arnB at 360.930 kb on - strand, within arnB at 361.313 kb on - strand at 361.366 kb on + strand at 361.412 kb on - strand at 361.476 kb on + strand at 361.478 kb on + strand at 361.479 kb on - strand at 361.546 kb on - strand at 361.546 kb on - strand at 361.616 kb on - strand at 361.685 kb on - strand at 361.695 kb on + strand at 361.696 kb on - strand at 361.697 kb on + strand at 361.697 kb on + strand at 361.842 kb on + strand at 361.850 kb on + strand at 361.851 kb on - strand at 362.053 kb on + strand at 362.053 kb on + strand at 362.054 kb on - strand at 362.054 kb on - strand at 362.109 kb on - strand at 362.119 kb on - strand at 362.229 kb on + strand at 362.255 kb on + strand at 362.261 kb on - strand at 362.261 kb on - strand at 362.287 kb on + strand at 362.346 kb on - strand at 362.418 kb on - strand at 362.418 kb on - strand at 362.484 kb on - strand, within IJEDHG_02615 at 362.528 kb on - strand, within IJEDHG_02615 at 362.528 kb on - strand, within IJEDHG_02615 at 362.528 kb on - strand, within IJEDHG_02615 at 362.528 kb on - strand, within IJEDHG_02615 at 362.528 kb on - strand, within IJEDHG_02615 at 362.590 kb on + strand, within IJEDHG_02615 at 362.804 kb on - strand, within IJEDHG_02615 at 362.810 kb on - strand, within IJEDHG_02615 at 362.966 kb on + strand, within IJEDHG_02615
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-Glucose remove 360,924 + arnB IJEDHG_02605 0.66 -0.8 360,924 + arnB IJEDHG_02605 0.66 -1.9 360,925 - arnB IJEDHG_02605 0.66 -1.7 360,925 - arnB IJEDHG_02605 0.66 -2.8 360,925 - arnB IJEDHG_02605 0.66 -1.1 360,929 + arnB IJEDHG_02605 0.67 -1.3 360,930 - arnB IJEDHG_02605 0.67 -0.4 361,313 - -1.7 361,366 + -0.7 361,412 - +0.3 361,476 + -0.5 361,478 + -0.3 361,479 - -0.2 361,546 - +0.8 361,546 - +0.8 361,616 - -0.1 361,685 - -0.2 361,695 + -0.3 361,696 - -0.2 361,697 + +0.1 361,697 + +0.7 361,842 + -0.4 361,850 + +0.4 361,851 - +0.9 362,053 + -0.4 362,053 + +0.3 362,054 - -0.6 362,054 - +0.4 362,109 - -0.3 362,119 - -0.0 362,229 + +0.1 362,255 + +0.6 362,261 - +0.0 362,261 - +0.1 362,287 + -0.4 362,346 - +0.3 362,418 - -0.1 362,418 - +1.0 362,484 - IJEDHG_02615 0.12 +0.2 362,528 - IJEDHG_02615 0.14 +0.4 362,528 - IJEDHG_02615 0.14 -0.1 362,528 - IJEDHG_02615 0.14 +0.3 362,528 - IJEDHG_02615 0.14 +0.3 362,528 - IJEDHG_02615 0.14 +0.1 362,590 + IJEDHG_02615 0.17 +0.2 362,804 - IJEDHG_02615 0.27 +0.3 362,810 - IJEDHG_02615 0.27 +0.4 362,966 + IJEDHG_02615 0.35 -0.8
Or see this region's nucleotide sequence