Experiment: MoLS4 without Lipoic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt livG and livF are separated by 13 nucleotides livF and DVU0717 are separated by 218 nucleotides DVU0717 and DVU0718 are separated by 95 nucleotides DVU0718 and DVU0719 overlap by 4 nucleotides
DVU0715: livG - branched-chain amino acid ABC transporter, ATP binding protein (TIGR), at 794,741 to 795,508
livG
DVU0716: livF - branched-chain amino acid ABC transporter, ATP-binding protein (TIGR), at 795,522 to 796,238
livF
DVU0717: DVU0717 - GGDEF domain/EAL domain protein (TIGR), at 796,457 to 797,965
DVU0717
DVU0718: DVU0718 - ISDvu2, transposase OrfA (TIGR), at 798,061 to 798,459
DVU0718
DVU0719: DVU0719 - ISDvu2, transposase OrfB (TIGR), at 798,456 to 799,298
DVU0719
Position (kb) 796
797
798 Strain fitness (log2 ratio) -2
-1
0
1 at 795.457 kb on - strand at 795.524 kb on - strand at 795.647 kb on - strand, within livF at 795.733 kb on + strand, within livF at 795.733 kb on + strand, within livF at 795.764 kb on + strand, within livF at 795.897 kb on + strand, within livF at 795.979 kb on + strand, within livF at 796.068 kb on - strand, within livF at 796.078 kb on + strand, within livF at 796.122 kb on - strand, within livF at 796.285 kb on + strand at 796.293 kb on + strand at 796.361 kb on - strand at 796.415 kb on - strand at 796.463 kb on + strand at 796.463 kb on + strand at 796.463 kb on + strand at 796.471 kb on - strand at 796.550 kb on + strand at 796.556 kb on + strand at 796.581 kb on + strand at 796.672 kb on - strand, within DVU0717 at 796.748 kb on + strand, within DVU0717 at 796.865 kb on - strand, within DVU0717 at 797.020 kb on - strand, within DVU0717 at 797.053 kb on - strand, within DVU0717 at 797.128 kb on + strand, within DVU0717 at 797.250 kb on - strand, within DVU0717 at 797.277 kb on - strand, within DVU0717 at 797.284 kb on + strand, within DVU0717 at 797.307 kb on - strand, within DVU0717 at 797.317 kb on - strand, within DVU0717 at 797.442 kb on - strand, within DVU0717 at 797.538 kb on + strand, within DVU0717 at 797.597 kb on + strand, within DVU0717 at 797.634 kb on - strand, within DVU0717 at 797.646 kb on + strand, within DVU0717 at 797.655 kb on - strand, within DVU0717 at 797.655 kb on - strand, within DVU0717 at 797.756 kb on - strand, within DVU0717 at 797.816 kb on - strand at 797.899 kb on - strand at 798.007 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 without Lipoic remove 795,457 - -0.7 795,524 - -0.3 795,647 - livF DVU0716 0.17 -0.2 795,733 + livF DVU0716 0.29 -0.6 795,733 + livF DVU0716 0.29 -0.3 795,764 + livF DVU0716 0.34 -1.1 795,897 + livF DVU0716 0.52 +0.1 795,979 + livF DVU0716 0.64 -0.4 796,068 - livF DVU0716 0.76 +0.2 796,078 + livF DVU0716 0.78 -1.3 796,122 - livF DVU0716 0.84 -0.2 796,285 + -0.0 796,293 + -0.4 796,361 - -0.2 796,415 - +0.5 796,463 + +0.1 796,463 + +0.5 796,463 + -0.1 796,471 - -0.1 796,550 + -0.4 796,556 + -0.3 796,581 + -2.0 796,672 - DVU0717 0.14 +0.4 796,748 + DVU0717 0.19 +0.4 796,865 - DVU0717 0.27 -0.4 797,020 - DVU0717 0.37 +0.3 797,053 - DVU0717 0.39 -0.1 797,128 + DVU0717 0.44 +0.2 797,250 - DVU0717 0.53 -0.2 797,277 - DVU0717 0.54 -0.0 797,284 + DVU0717 0.55 +0.6 797,307 - DVU0717 0.56 +0.1 797,317 - DVU0717 0.57 -0.6 797,442 - DVU0717 0.65 +1.1 797,538 + DVU0717 0.72 +0.2 797,597 + DVU0717 0.76 +0.0 797,634 - DVU0717 0.78 +0.3 797,646 + DVU0717 0.79 +1.6 797,655 - DVU0717 0.79 +0.4 797,655 - DVU0717 0.79 +1.1 797,756 - DVU0717 0.86 +0.1 797,816 - -0.8 797,899 - +0.8 798,007 - +0.1
Or see this region's nucleotide sequence