Experiment: MoLS4 without Biotin with Avidin
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU2454 and DVU2455 are separated by 156 nucleotides DVU2455 and DV_r01 are separated by 264 nucleotides DV_r01 and rrf are separated by 41 nucleotides rrf and rrl are separated by 107 nucleotides
DVU2454: DVU2454 - hypothetical protein (TIGR), at 2,557,471 to 2,557,740
DVU2454
DVU2455: DVU2455 - NAD-dependent epimerase/dehydratase family protein (TIGR), at 2,557,897 to 2,558,847
DVU2455
DV_r01: DV_r01 - 5S ribosomal RNA (RefSeq), at 2,559,112 to 2,559,228
_r01
Dv5SC: rrf - 5S ribosomal RNA (VIMSS-AUTO), at 2,559,270 to 2,559,386
rrf
Dv23SC: rrl - 23S ribosomal RNA (VIMSS-AUTO), at 2,559,494 to 2,562,414
rrl
Position (kb)
2557
2558
2559 Strain fitness (log2 ratio)
-1
0
1 at 2557.274 kb on - strand at 2557.308 kb on + strand at 2557.353 kb on + strand at 2557.361 kb on - strand at 2557.361 kb on - strand at 2557.371 kb on - strand at 2557.539 kb on - strand, within DVU2454 at 2557.714 kb on + strand at 2557.791 kb on + strand at 2557.791 kb on + strand at 2557.794 kb on - strand at 2557.867 kb on - strand at 2557.875 kb on + strand at 2557.954 kb on - strand at 2557.954 kb on - strand at 2557.954 kb on - strand at 2558.029 kb on + strand, within DVU2455 at 2558.054 kb on + strand, within DVU2455 at 2558.362 kb on - strand, within DVU2455 at 2558.524 kb on + strand, within DVU2455 at 2558.532 kb on - strand, within DVU2455 at 2558.609 kb on - strand, within DVU2455 at 2558.793 kb on - strand at 2558.994 kb on - strand at 2559.016 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 without Biotin with Avidin remove 2,557,274 - -0.1 2,557,308 + -0.4 2,557,353 + -0.1 2,557,361 - -1.5 2,557,361 - -0.1 2,557,371 - +0.1 2,557,539 - DVU2454 0.25 -1.5 2,557,714 + -0.6 2,557,791 + -0.4 2,557,791 + +0.1 2,557,794 - +0.2 2,557,867 - -0.6 2,557,875 + -0.5 2,557,954 - -0.5 2,557,954 - -0.7 2,557,954 - -0.1 2,558,029 + DVU2455 0.14 -0.4 2,558,054 + DVU2455 0.17 -0.0 2,558,362 - DVU2455 0.49 -1.1 2,558,524 + DVU2455 0.66 -1.4 2,558,532 - DVU2455 0.67 -1.0 2,558,609 - DVU2455 0.75 -0.7 2,558,793 - -0.0 2,558,994 - -0.5 2,559,016 + +0.1
Or see this region's nucleotide sequence