Experiment: HBM-Sucrose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IJEDHG_03220 and IJEDHG_03225 are separated by 65 nucleotides IJEDHG_03225 and IJEDHG_03230 are separated by 209 nucleotides IJEDHG_03230 and IJEDHG_03235 are separated by 547 nucleotides IJEDHG_03235 and IJEDHG_03240 are separated by 41 nucleotides
IJEDHG_03220: IJEDHG_03220 - IS1 family transposase, at 480,891 to 481,247
_03220
IJEDHG_03225: IJEDHG_03225 - IS1-like element transposase, at 481,313 to 481,588
_03225
IJEDHG_03230: IJEDHG_03230 - hypothetical protein, at 481,798 to 482,004
_03230
IJEDHG_03235: IJEDHG_03235 - hypothetical protein, at 482,552 to 482,665
_03235
IJEDHG_03240: IJEDHG_03240 - 6-phospho-beta-glucosidase, at 482,707 to 484,146
_03240
Position (kb) 481
482
483 Strain fitness (log2 ratio) -2
-1
0
1 at 480.836 kb on + strand at 480.836 kb on + strand at 480.836 kb on + strand at 480.859 kb on + strand at 481.710 kb on - strand at 481.722 kb on - strand at 481.722 kb on - strand at 481.746 kb on + strand at 481.804 kb on - strand at 481.891 kb on + strand, within IJEDHG_03230 at 481.891 kb on + strand, within IJEDHG_03230 at 481.892 kb on - strand, within IJEDHG_03230 at 481.892 kb on - strand, within IJEDHG_03230 at 481.905 kb on + strand, within IJEDHG_03230 at 481.912 kb on + strand, within IJEDHG_03230 at 481.913 kb on - strand, within IJEDHG_03230 at 481.913 kb on - strand, within IJEDHG_03230 at 482.056 kb on - strand at 482.145 kb on - strand at 482.204 kb on + strand at 482.236 kb on + strand at 482.236 kb on + strand at 482.237 kb on - strand at 482.240 kb on + strand at 482.252 kb on + strand at 482.276 kb on - strand at 482.301 kb on - strand at 482.355 kb on - strand at 482.417 kb on - strand at 482.417 kb on - strand at 482.472 kb on - strand at 482.552 kb on - strand at 482.681 kb on + strand at 482.688 kb on + strand at 482.693 kb on - strand at 482.702 kb on + strand at 482.716 kb on + strand at 482.716 kb on + strand at 482.716 kb on + strand at 482.717 kb on - strand at 482.796 kb on + strand at 482.922 kb on + strand, within IJEDHG_03240 at 482.992 kb on - strand, within IJEDHG_03240
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-Sucrose remove 480,836 + +1.3 480,836 + +0.6 480,836 + +0.8 480,859 + -0.4 481,710 - +0.5 481,722 - -0.6 481,722 - -0.0 481,746 + +0.0 481,804 - +0.2 481,891 + IJEDHG_03230 0.45 -1.9 481,891 + IJEDHG_03230 0.45 -0.7 481,892 - IJEDHG_03230 0.45 -0.6 481,892 - IJEDHG_03230 0.45 -0.1 481,905 + IJEDHG_03230 0.52 -0.0 481,912 + IJEDHG_03230 0.55 +0.1 481,913 - IJEDHG_03230 0.56 +0.6 481,913 - IJEDHG_03230 0.56 -0.9 482,056 - +0.1 482,145 - -0.4 482,204 + +0.9 482,236 + +0.1 482,236 + -0.9 482,237 - -1.7 482,240 + +0.5 482,252 + +0.6 482,276 - -0.1 482,301 - -0.6 482,355 - -0.2 482,417 - +0.2 482,417 - -0.1 482,472 - +0.7 482,552 - +0.4 482,681 + -0.1 482,688 + +0.0 482,693 - +0.6 482,702 + -0.8 482,716 + -1.8 482,716 + +0.5 482,716 + -0.0 482,717 - -0.0 482,796 + -0.2 482,922 + IJEDHG_03240 0.15 +0.1 482,992 - IJEDHG_03240 0.20 -1.2
Or see this region's nucleotide sequence