Experiment: HBM-Sucrose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt arnA and arnC overlap by 1 nucleotides arnC and arnB overlap by 11 nucleotides arnB and IJEDHG_02610 are separated by 600 nucleotides IJEDHG_02610 and IJEDHG_02615 are separated by 177 nucleotides
IJEDHG_02595: arnA - bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA, at 357,209 to 359,191
arnA
IJEDHG_02600: arnC - undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase, at 359,191 to 360,171
arnC
IJEDHG_02605: arnB - UDP-4-amino-4-deoxy-L-arabinose aminotransferase, at 360,161 to 361,312
arnB
IJEDHG_02610: IJEDHG_02610 - hypothetical protein, at 361,913 to 362,050
_02610
IJEDHG_02615: IJEDHG_02615 - ABC-type xenobiotic transporter, at 362,228 to 364,351
_02615
Position (kb) 360
361
362 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 359.245 kb on - strand at 359.245 kb on - strand at 359.276 kb on + strand at 359.276 kb on + strand at 359.276 kb on + strand at 359.277 kb on - strand at 359.277 kb on - strand at 359.277 kb on - strand at 359.277 kb on - strand at 359.277 kb on - strand at 359.277 kb on - strand at 359.277 kb on - strand at 359.280 kb on + strand at 359.280 kb on + strand at 359.292 kb on - strand, within arnC at 359.292 kb on - strand, within arnC at 359.292 kb on - strand, within arnC at 359.292 kb on - strand, within arnC at 359.464 kb on - strand, within arnC at 359.469 kb on + strand, within arnC at 359.469 kb on + strand, within arnC at 359.469 kb on + strand, within arnC at 359.470 kb on - strand, within arnC at 359.470 kb on - strand, within arnC at 359.481 kb on + strand, within arnC at 359.484 kb on + strand, within arnC at 359.507 kb on + strand, within arnC at 359.507 kb on + strand, within arnC at 359.507 kb on + strand, within arnC at 359.508 kb on - strand, within arnC at 359.628 kb on + strand, within arnC at 359.628 kb on + strand, within arnC at 359.688 kb on + strand, within arnC at 359.688 kb on + strand, within arnC at 359.688 kb on + strand, within arnC at 359.689 kb on - strand, within arnC at 359.689 kb on - strand, within arnC at 359.689 kb on - strand, within arnC at 359.740 kb on + strand, within arnC at 359.761 kb on - strand, within arnC at 359.804 kb on - strand, within arnC at 359.920 kb on - strand, within arnC at 359.920 kb on - strand, within arnC at 359.939 kb on + strand, within arnC at 359.939 kb on + strand, within arnC at 359.940 kb on - strand, within arnC at 360.050 kb on + strand, within arnC at 360.065 kb on - strand, within arnC at 360.082 kb on - strand at 360.095 kb on - strand at 360.133 kb on + strand at 360.134 kb on - strand at 360.150 kb on + strand at 360.153 kb on + strand at 360.153 kb on + strand at 360.202 kb on + strand at 360.243 kb on - strand at 360.259 kb on + strand at 360.260 kb on - strand at 360.319 kb on - strand, within arnB at 360.589 kb on + strand, within arnB at 360.607 kb on - strand, within arnB at 360.610 kb on + strand, within arnB at 360.611 kb on - strand, within arnB at 360.611 kb on - strand, within arnB at 360.764 kb on - strand, within arnB at 360.823 kb on + strand, within arnB at 360.826 kb on - strand, within arnB at 360.924 kb on + strand, within arnB at 360.924 kb on + strand, within arnB at 360.925 kb on - strand, within arnB at 360.925 kb on - strand, within arnB at 360.925 kb on - strand, within arnB at 360.929 kb on + strand, within arnB at 360.930 kb on - strand, within arnB at 361.313 kb on - strand at 361.366 kb on + strand at 361.412 kb on - strand at 361.476 kb on + strand at 361.478 kb on + strand at 361.479 kb on - strand at 361.546 kb on - strand at 361.546 kb on - strand at 361.616 kb on - strand at 361.685 kb on - strand at 361.695 kb on + strand at 361.696 kb on - strand at 361.697 kb on + strand at 361.697 kb on + strand at 361.842 kb on + strand at 361.850 kb on + strand at 361.851 kb on - strand at 362.053 kb on + strand at 362.053 kb on + strand at 362.054 kb on - strand at 362.054 kb on - strand at 362.109 kb on - strand at 362.119 kb on - strand at 362.229 kb on + strand at 362.255 kb on + strand at 362.261 kb on - strand at 362.261 kb on - strand at 362.287 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction HBM-Sucrose remove 359,245 - -0.1 359,245 - -1.4 359,276 + -1.3 359,276 + -0.3 359,276 + +0.6 359,277 - -0.0 359,277 - -1.9 359,277 - +0.2 359,277 - -1.3 359,277 - -0.1 359,277 - -0.4 359,277 - -0.7 359,280 + -1.6 359,280 + -0.2 359,292 - arnC IJEDHG_02600 0.10 +0.6 359,292 - arnC IJEDHG_02600 0.10 -0.4 359,292 - arnC IJEDHG_02600 0.10 -0.3 359,292 - arnC IJEDHG_02600 0.10 +0.4 359,464 - arnC IJEDHG_02600 0.28 +0.3 359,469 + arnC IJEDHG_02600 0.28 +0.2 359,469 + arnC IJEDHG_02600 0.28 -0.8 359,469 + arnC IJEDHG_02600 0.28 -0.7 359,470 - arnC IJEDHG_02600 0.28 +0.3 359,470 - arnC IJEDHG_02600 0.28 -0.5 359,481 + arnC IJEDHG_02600 0.30 -1.7 359,484 + arnC IJEDHG_02600 0.30 +0.5 359,507 + arnC IJEDHG_02600 0.32 -0.9 359,507 + arnC IJEDHG_02600 0.32 -0.2 359,507 + arnC IJEDHG_02600 0.32 -0.5 359,508 - arnC IJEDHG_02600 0.32 -0.7 359,628 + arnC IJEDHG_02600 0.45 -3.0 359,628 + arnC IJEDHG_02600 0.45 -0.3 359,688 + arnC IJEDHG_02600 0.51 -1.3 359,688 + arnC IJEDHG_02600 0.51 +0.3 359,688 + arnC IJEDHG_02600 0.51 -1.3 359,689 - arnC IJEDHG_02600 0.51 -0.6 359,689 - arnC IJEDHG_02600 0.51 -1.0 359,689 - arnC IJEDHG_02600 0.51 -0.1 359,740 + arnC IJEDHG_02600 0.56 -1.0 359,761 - arnC IJEDHG_02600 0.58 -1.4 359,804 - arnC IJEDHG_02600 0.62 -0.7 359,920 - arnC IJEDHG_02600 0.74 -0.8 359,920 - arnC IJEDHG_02600 0.74 +0.6 359,939 + arnC IJEDHG_02600 0.76 -1.3 359,939 + arnC IJEDHG_02600 0.76 -0.0 359,940 - arnC IJEDHG_02600 0.76 -0.2 360,050 + arnC IJEDHG_02600 0.88 +1.0 360,065 - arnC IJEDHG_02600 0.89 +0.4 360,082 - -1.1 360,095 - -0.4 360,133 + -0.0 360,134 - -1.3 360,150 + +0.1 360,153 + -0.7 360,153 + -0.9 360,202 + +0.1 360,243 - +0.3 360,259 + -0.0 360,260 - +0.6 360,319 - arnB IJEDHG_02605 0.14 -1.7 360,589 + arnB IJEDHG_02605 0.37 -0.3 360,607 - arnB IJEDHG_02605 0.39 -0.6 360,610 + arnB IJEDHG_02605 0.39 -0.6 360,611 - arnB IJEDHG_02605 0.39 +0.6 360,611 - arnB IJEDHG_02605 0.39 -0.5 360,764 - arnB IJEDHG_02605 0.52 -0.6 360,823 + arnB IJEDHG_02605 0.57 +0.4 360,826 - arnB IJEDHG_02605 0.58 +1.9 360,924 + arnB IJEDHG_02605 0.66 -0.1 360,924 + arnB IJEDHG_02605 0.66 +0.4 360,925 - arnB IJEDHG_02605 0.66 -0.2 360,925 - arnB IJEDHG_02605 0.66 -0.7 360,925 - arnB IJEDHG_02605 0.66 -0.4 360,929 + arnB IJEDHG_02605 0.67 -0.9 360,930 - arnB IJEDHG_02605 0.67 +0.3 361,313 - -0.4 361,366 + -1.0 361,412 - +0.2 361,476 + -0.4 361,478 + -0.7 361,479 - -0.5 361,546 - +0.5 361,546 - -0.3 361,616 - -0.9 361,685 - -0.1 361,695 + -0.0 361,696 - +0.3 361,697 + -1.0 361,697 + -0.1 361,842 + +0.5 361,850 + -0.6 361,851 - -0.2 362,053 + -0.5 362,053 + -0.1 362,054 - -0.4 362,054 - -0.1 362,109 - -0.1 362,119 - +0.2 362,229 + -0.4 362,255 + -0.4 362,261 - -0.1 362,261 - +0.5 362,287 + +0.5
Or see this region's nucleotide sequence