Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1783

Experiment: MoLS4 without Biotin with Avidin

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1782 and DVU1783 overlap by 8 nucleotidesDVU1783 and DVU1784 are separated by 171 nucleotides DVU1782: DVU1782 - iron-sulfur cluster-binding protein (TIGR), at 1,844,586 to 1,846,013 DVU1782 DVU1783: DVU1783 - cysteine-rich domain protein (TIGR), at 1,846,006 to 1,846,758 DVU1783 DVU1784: DVU1784 - oxidoreductase, short-chain dehydrogenase/reductase family (TIGR), at 1,846,930 to 1,847,691 DVU1784 Position (kb) 1846 1847Strain fitness (log2 ratio) -2 -1 0 1at 1845.044 kb on - strand, within DVU1782at 1845.088 kb on + strand, within DVU1782at 1845.098 kb on + strand, within DVU1782at 1845.106 kb on - strand, within DVU1782at 1845.300 kb on + strand, within DVU1782at 1845.476 kb on - strand, within DVU1782at 1845.558 kb on + strand, within DVU1782at 1845.599 kb on + strand, within DVU1782at 1845.692 kb on + strand, within DVU1782at 1845.728 kb on - strand, within DVU1782at 1845.736 kb on - strand, within DVU1782at 1845.803 kb on + strand, within DVU1782at 1845.822 kb on - strand, within DVU1782at 1845.855 kb on - strand, within DVU1782at 1845.860 kb on + strand, within DVU1782at 1845.868 kb on - strand, within DVU1782at 1845.929 kb on - strandat 1845.998 kb on - strandat 1846.033 kb on - strandat 1846.048 kb on + strandat 1846.048 kb on + strandat 1846.053 kb on + strandat 1846.243 kb on + strand, within DVU1783at 1846.314 kb on + strand, within DVU1783at 1846.355 kb on + strand, within DVU1783at 1846.491 kb on - strand, within DVU1783at 1846.528 kb on - strand, within DVU1783at 1846.618 kb on - strand, within DVU1783at 1846.633 kb on + strand, within DVU1783at 1846.730 kb on + strandat 1846.738 kb on - strandat 1846.738 kb on - strandat 1846.768 kb on - strandat 1846.787 kb on + strandat 1846.886 kb on + strandat 1846.914 kb on + strandat 1846.929 kb on - strandat 1846.930 kb on + strandat 1846.938 kb on - strandat 1847.079 kb on - strand, within DVU1784at 1847.099 kb on - strand, within DVU1784at 1847.109 kb on + strand, within DVU1784at 1847.142 kb on + strand, within DVU1784at 1847.256 kb on + strand, within DVU1784at 1847.276 kb on + strand, within DVU1784at 1847.394 kb on - strand, within DVU1784at 1847.428 kb on + strand, within DVU1784at 1847.433 kb on + strand, within DVU1784at 1847.543 kb on - strand, within DVU1784at 1847.657 kb on - strandat 1847.722 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 without Biotin with Avidin
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1,845,044 - DVU1782 0.32 -0.3
1,845,088 + DVU1782 0.35 -0.3
1,845,098 + DVU1782 0.36 -0.3
1,845,106 - DVU1782 0.36 -0.3
1,845,300 + DVU1782 0.50 -0.3
1,845,476 - DVU1782 0.62 -0.0
1,845,558 + DVU1782 0.68 -0.1
1,845,599 + DVU1782 0.71 -0.2
1,845,692 + DVU1782 0.77 -0.2
1,845,728 - DVU1782 0.80 -0.6
1,845,736 - DVU1782 0.81 +0.3
1,845,803 + DVU1782 0.85 -0.2
1,845,822 - DVU1782 0.87 -0.3
1,845,855 - DVU1782 0.89 +0.7
1,845,860 + DVU1782 0.89 +1.2
1,845,868 - DVU1782 0.90 -0.2
1,845,929 - +0.3
1,845,998 - -0.1
1,846,033 - +0.0
1,846,048 + -0.7
1,846,048 + -0.2
1,846,053 + +0.2
1,846,243 + DVU1783 0.31 +1.5
1,846,314 + DVU1783 0.41 -0.7
1,846,355 + DVU1783 0.46 -1.7
1,846,491 - DVU1783 0.64 -1.8
1,846,528 - DVU1783 0.69 -0.5
1,846,618 - DVU1783 0.81 -0.1
1,846,633 + DVU1783 0.83 +0.2
1,846,730 + -0.4
1,846,738 - -0.6
1,846,738 - -0.7
1,846,768 - -0.1
1,846,787 + -0.8
1,846,886 + +0.7
1,846,914 + -0.1
1,846,929 - -0.9
1,846,930 + -0.2
1,846,938 - -0.2
1,847,079 - DVU1784 0.20 -0.3
1,847,099 - DVU1784 0.22 -0.2
1,847,109 + DVU1784 0.23 -0.6
1,847,142 + DVU1784 0.28 +1.2
1,847,256 + DVU1784 0.43 +0.1
1,847,276 + DVU1784 0.45 -0.1
1,847,394 - DVU1784 0.61 +1.1
1,847,428 + DVU1784 0.65 -0.3
1,847,433 + DVU1784 0.66 -0.9
1,847,543 - DVU1784 0.80 -0.1
1,847,657 - -0.6
1,847,722 + -0.8

Or see this region's nucleotide sequence