Experiment: Lactate-Sulfate (60-30 mM) minimal (MoLS4)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU3162 and DVU3163 are separated by 73 nucleotides DVU3163 and DVU3164 overlap by 4 nucleotides DVU3164 and DVU3165 are separated by 6 nucleotides DVU3165 and DVU3166 are separated by 52 nucleotides
DVU3162: DVU3162 - ABC transporter, periplasmic substrate-binding protein (TIGR), at 3,318,606 to 3,319,901
DVU3162
DVU3163: DVU3163 - ABC transporter, permease protein (TIGR), at 3,319,975 to 3,320,856
DVU3163
DVU3164: DVU3164 - ABC transporter, permease protein (TIGR), at 3,320,853 to 3,321,686
DVU3164
DVU3165: DVU3165 - conserved domain protein (TIGR), at 3,321,693 to 3,322,553
DVU3165
DVU3166: DVU3166 - alanyl-tRNA synthetase family protein, putative (TIGR), at 3,322,606 to 3,323,262
DVU3166
Position (kb)
3320
3321
3322 Strain fitness (log2 ratio)
-1
0
1 at 3319.857 kb on + strand at 3319.857 kb on + strand at 3319.905 kb on + strand at 3319.905 kb on + strand at 3319.905 kb on + strand at 3319.972 kb on + strand at 3319.977 kb on + strand at 3320.014 kb on - strand at 3320.058 kb on + strand at 3320.085 kb on + strand, within DVU3163 at 3320.087 kb on + strand, within DVU3163 at 3320.152 kb on - strand, within DVU3163 at 3320.184 kb on + strand, within DVU3163 at 3320.221 kb on - strand, within DVU3163 at 3320.239 kb on - strand, within DVU3163 at 3320.249 kb on + strand, within DVU3163 at 3320.256 kb on + strand, within DVU3163 at 3320.314 kb on + strand, within DVU3163 at 3320.393 kb on - strand, within DVU3163 at 3320.576 kb on - strand, within DVU3163 at 3320.599 kb on - strand, within DVU3163 at 3320.601 kb on + strand, within DVU3163 at 3320.617 kb on - strand, within DVU3163 at 3320.628 kb on + strand, within DVU3163 at 3320.636 kb on - strand, within DVU3163 at 3320.685 kb on + strand, within DVU3163 at 3320.713 kb on - strand, within DVU3163 at 3320.718 kb on + strand, within DVU3163 at 3320.765 kb on - strand, within DVU3163 at 3320.773 kb on - strand at 3320.773 kb on - strand at 3320.795 kb on + strand at 3320.810 kb on + strand at 3320.810 kb on + strand at 3320.818 kb on - strand at 3320.828 kb on - strand at 3320.828 kb on - strand at 3320.850 kb on - strand at 3320.943 kb on + strand, within DVU3164 at 3320.948 kb on + strand, within DVU3164 at 3320.948 kb on + strand, within DVU3164 at 3320.953 kb on + strand, within DVU3164 at 3320.995 kb on + strand, within DVU3164 at 3321.027 kb on - strand, within DVU3164 at 3321.039 kb on + strand, within DVU3164 at 3321.084 kb on - strand, within DVU3164 at 3321.114 kb on - strand, within DVU3164 at 3321.135 kb on + strand, within DVU3164 at 3321.200 kb on + strand, within DVU3164 at 3321.208 kb on - strand, within DVU3164 at 3321.208 kb on - strand, within DVU3164 at 3321.236 kb on + strand, within DVU3164 at 3321.298 kb on - strand, within DVU3164 at 3321.308 kb on - strand, within DVU3164 at 3321.428 kb on - strand, within DVU3164 at 3321.445 kb on + strand, within DVU3164 at 3321.445 kb on + strand, within DVU3164 at 3321.533 kb on - strand, within DVU3164 at 3321.566 kb on + strand, within DVU3164 at 3321.579 kb on + strand, within DVU3164 at 3321.599 kb on + strand, within DVU3164 at 3321.615 kb on - strand at 3321.615 kb on - strand at 3321.689 kb on - strand at 3321.709 kb on - strand at 3321.745 kb on + strand at 3321.782 kb on - strand, within DVU3165 at 3321.853 kb on + strand, within DVU3165 at 3321.857 kb on - strand, within DVU3165 at 3321.866 kb on - strand, within DVU3165 at 3321.881 kb on - strand, within DVU3165 at 3321.928 kb on - strand, within DVU3165 at 3321.959 kb on - strand, within DVU3165 at 3322.002 kb on + strand, within DVU3165 at 3322.002 kb on + strand, within DVU3165 at 3322.015 kb on - strand, within DVU3165 at 3322.029 kb on + strand, within DVU3165 at 3322.043 kb on + strand, within DVU3165 at 3322.070 kb on - strand, within DVU3165 at 3322.089 kb on + strand, within DVU3165 at 3322.148 kb on - strand, within DVU3165 at 3322.168 kb on + strand, within DVU3165 at 3322.228 kb on - strand, within DVU3165 at 3322.265 kb on - strand, within DVU3165 at 3322.361 kb on + strand, within DVU3165 at 3322.443 kb on - strand, within DVU3165 at 3322.555 kb on - strand at 3322.602 kb on + strand at 3322.612 kb on - strand at 3322.623 kb on + strand at 3322.634 kb on + strand at 3322.647 kb on - strand at 3322.660 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-Sulfate (60-30 mM) minimal (MoLS4) remove 3,319,857 + +0.2 3,319,857 + -0.0 3,319,905 + -0.1 3,319,905 + +0.5 3,319,905 + -0.3 3,319,972 + +0.3 3,319,977 + -0.9 3,320,014 - -0.1 3,320,058 + -0.8 3,320,085 + DVU3163 0.12 -1.5 3,320,087 + DVU3163 0.13 -0.2 3,320,152 - DVU3163 0.20 -0.9 3,320,184 + DVU3163 0.24 +0.2 3,320,221 - DVU3163 0.28 -0.1 3,320,239 - DVU3163 0.30 -0.0 3,320,249 + DVU3163 0.31 +0.1 3,320,256 + DVU3163 0.32 -0.9 3,320,314 + DVU3163 0.38 -0.2 3,320,393 - DVU3163 0.47 -0.2 3,320,576 - DVU3163 0.68 +0.2 3,320,599 - DVU3163 0.71 -0.1 3,320,601 + DVU3163 0.71 -1.1 3,320,617 - DVU3163 0.73 -0.6 3,320,628 + DVU3163 0.74 +0.3 3,320,636 - DVU3163 0.75 -1.2 3,320,685 + DVU3163 0.80 -0.3 3,320,713 - DVU3163 0.84 -1.0 3,320,718 + DVU3163 0.84 -0.2 3,320,765 - DVU3163 0.90 -0.2 3,320,773 - -0.9 3,320,773 - +0.7 3,320,795 + +0.0 3,320,810 + -0.1 3,320,810 + -0.1 3,320,818 - +0.0 3,320,828 - +0.9 3,320,828 - -0.1 3,320,850 - -0.9 3,320,943 + DVU3164 0.11 +0.6 3,320,948 + DVU3164 0.11 +1.2 3,320,948 + DVU3164 0.11 +0.4 3,320,953 + DVU3164 0.12 -0.3 3,320,995 + DVU3164 0.17 +0.8 3,321,027 - DVU3164 0.21 +0.1 3,321,039 + DVU3164 0.22 +0.2 3,321,084 - DVU3164 0.28 +0.6 3,321,114 - DVU3164 0.31 +0.1 3,321,135 + DVU3164 0.34 +0.4 3,321,200 + DVU3164 0.42 +0.1 3,321,208 - DVU3164 0.43 +0.0 3,321,208 - DVU3164 0.43 -0.5 3,321,236 + DVU3164 0.46 +0.1 3,321,298 - DVU3164 0.53 +0.0 3,321,308 - DVU3164 0.55 +0.0 3,321,428 - DVU3164 0.69 -0.1 3,321,445 + DVU3164 0.71 +0.4 3,321,445 + DVU3164 0.71 +0.3 3,321,533 - DVU3164 0.82 -0.3 3,321,566 + DVU3164 0.85 +0.3 3,321,579 + DVU3164 0.87 +0.9 3,321,599 + DVU3164 0.89 +0.3 3,321,615 - +0.6 3,321,615 - -0.5 3,321,689 - +0.1 3,321,709 - +0.4 3,321,745 + -0.1 3,321,782 - DVU3165 0.10 +0.4 3,321,853 + DVU3165 0.19 -0.1 3,321,857 - DVU3165 0.19 +0.6 3,321,866 - DVU3165 0.20 -0.6 3,321,881 - DVU3165 0.22 +0.9 3,321,928 - DVU3165 0.27 -0.5 3,321,959 - DVU3165 0.31 +0.0 3,322,002 + DVU3165 0.36 +0.2 3,322,002 + DVU3165 0.36 -0.3 3,322,015 - DVU3165 0.37 -1.0 3,322,029 + DVU3165 0.39 -0.5 3,322,043 + DVU3165 0.41 -0.5 3,322,070 - DVU3165 0.44 -0.2 3,322,089 + DVU3165 0.46 -0.3 3,322,148 - DVU3165 0.53 -0.2 3,322,168 + DVU3165 0.55 +1.3 3,322,228 - DVU3165 0.62 -0.4 3,322,265 - DVU3165 0.66 +1.6 3,322,361 + DVU3165 0.78 -0.1 3,322,443 - DVU3165 0.87 +0.2 3,322,555 - -0.2 3,322,602 + -0.7 3,322,612 - +0.9 3,322,623 + -0.4 3,322,634 + -0.0 3,322,647 - +0.0 3,322,660 + -0.2
Or see this region's nucleotide sequence