Experiment: Lactate-Sulfate (60-30 mM) minimal (MoLS4)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hemC and DVU1891 are separated by 342 nucleotides DVU1891 and DVU1892 overlap by 31 nucleotides DVU1892 and DVU1893 are separated by 127 nucleotides
DVU1890: hemC - porphobilinogen deaminase (TIGR), at 1,962,409 to 1,963,356
hemC
DVU1891: DVU1891 - conserved hypothetical protein (TIGR), at 1,963,699 to 1,964,460
DVU1891
DVU1892: DVU1892 - glycosyl transferase, group 2 family protein (TIGR), at 1,964,430 to 1,965,179
DVU1892
DVU1893: DVU1893 - ATP-dependent protease, putative (TIGR), at 1,965,307 to 1,967,727
DVU1893
Position (kb)
1963
1964
1965 Strain fitness (log2 ratio)
-1
0
1 at 1963.426 kb on - strand at 1963.490 kb on + strand at 1963.543 kb on + strand at 1963.576 kb on + strand at 1963.605 kb on + strand at 1963.666 kb on - strand at 1963.666 kb on - strand at 1963.678 kb on - strand at 1963.691 kb on + strand at 1963.696 kb on + strand at 1963.848 kb on + strand, within DVU1891 at 1963.889 kb on + strand, within DVU1891 at 1963.889 kb on + strand, within DVU1891 at 1963.897 kb on - strand, within DVU1891 at 1963.976 kb on - strand, within DVU1891 at 1963.989 kb on + strand, within DVU1891 at 1964.149 kb on + strand, within DVU1891 at 1964.183 kb on + strand, within DVU1891 at 1964.279 kb on - strand, within DVU1891 at 1964.285 kb on - strand, within DVU1891 at 1964.456 kb on + strand at 1964.492 kb on - strand at 1964.507 kb on + strand, within DVU1892 at 1964.522 kb on + strand, within DVU1892 at 1964.524 kb on + strand, within DVU1892 at 1964.575 kb on - strand, within DVU1892 at 1964.575 kb on - strand, within DVU1892 at 1964.671 kb on + strand, within DVU1892 at 1964.671 kb on + strand, within DVU1892 at 1964.671 kb on + strand, within DVU1892 at 1964.671 kb on + strand, within DVU1892 at 1964.709 kb on + strand, within DVU1892 at 1964.713 kb on - strand, within DVU1892 at 1964.833 kb on + strand, within DVU1892 at 1964.835 kb on + strand, within DVU1892 at 1964.891 kb on + strand, within DVU1892 at 1965.040 kb on - strand, within DVU1892 at 1965.068 kb on - strand, within DVU1892 at 1965.075 kb on - strand, within DVU1892 at 1965.094 kb on + strand, within DVU1892 at 1965.104 kb on + strand, within DVU1892 at 1965.104 kb on + strand, within DVU1892 at 1965.178 kb on - strand at 1965.211 kb on - strand at 1965.217 kb on + strand at 1965.225 kb on - strand at 1965.225 kb on - strand at 1965.293 kb on - strand at 1965.300 kb on - strand at 1965.300 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Lactate-Sulfate (60-30 mM) minimal (MoLS4) remove 1,963,426 - -0.5 1,963,490 + -0.0 1,963,543 + -1.2 1,963,576 + +0.2 1,963,605 + +0.2 1,963,666 - -1.0 1,963,666 - -0.0 1,963,678 - -0.5 1,963,691 + -0.4 1,963,696 + +0.3 1,963,848 + DVU1891 0.20 +0.0 1,963,889 + DVU1891 0.25 +0.2 1,963,889 + DVU1891 0.25 -0.0 1,963,897 - DVU1891 0.26 -0.9 1,963,976 - DVU1891 0.36 -0.3 1,963,989 + DVU1891 0.38 +0.5 1,964,149 + DVU1891 0.59 -0.4 1,964,183 + DVU1891 0.64 +0.1 1,964,279 - DVU1891 0.76 +0.2 1,964,285 - DVU1891 0.77 -1.2 1,964,456 + -1.4 1,964,492 - -1.0 1,964,507 + DVU1892 0.10 -0.1 1,964,522 + DVU1892 0.12 +0.2 1,964,524 + DVU1892 0.13 -0.2 1,964,575 - DVU1892 0.19 -0.2 1,964,575 - DVU1892 0.19 -0.3 1,964,671 + DVU1892 0.32 +1.1 1,964,671 + DVU1892 0.32 +0.3 1,964,671 + DVU1892 0.32 -0.0 1,964,671 + DVU1892 0.32 -0.7 1,964,709 + DVU1892 0.37 +0.9 1,964,713 - DVU1892 0.38 -0.8 1,964,833 + DVU1892 0.54 -0.2 1,964,835 + DVU1892 0.54 +0.0 1,964,891 + DVU1892 0.61 +0.5 1,965,040 - DVU1892 0.81 +0.4 1,965,068 - DVU1892 0.85 -0.5 1,965,075 - DVU1892 0.86 +0.1 1,965,094 + DVU1892 0.89 +0.4 1,965,104 + DVU1892 0.90 +0.8 1,965,104 + DVU1892 0.90 -0.7 1,965,178 - -0.2 1,965,211 - -1.1 1,965,217 + +0.0 1,965,225 - -0.2 1,965,225 - -0.1 1,965,293 - -0.2 1,965,300 - -0.3 1,965,300 - -0.9
Or see this region's nucleotide sequence