Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3384

Experiment: Lactate-Sulfate (60-30 mM) minimal (MoLS4)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntzraS and zraP are separated by 591 nucleotideszraP and DVU3386 are separated by 564 nucleotides DVU3382: zraS - sensor protein ZraS (TIGR), at 3,555,731 to 3,557,770 zraS DVU3384: zraP - zinc resistance-associated protein (TIGR), at 3,558,362 to 3,558,883 zraP DVU3386: DVU3386 - permease, putative (TIGR), at 3,559,448 to 3,560,830 DVU3386 Position (kb) 3558 3559Strain fitness (log2 ratio) -2 -1 0 1at 3557.363 kb on + strand, within zraSat 3557.368 kb on + strand, within zraSat 3557.371 kb on - strand, within zraSat 3557.391 kb on - strand, within zraSat 3557.410 kb on - strand, within zraSat 3557.418 kb on + strand, within zraSat 3557.421 kb on - strand, within zraSat 3557.423 kb on + strand, within zraSat 3557.423 kb on + strand, within zraSat 3557.426 kb on - strand, within zraSat 3557.426 kb on - strand, within zraSat 3557.428 kb on + strand, within zraSat 3557.444 kb on + strand, within zraSat 3557.482 kb on + strand, within zraSat 3557.548 kb on + strand, within zraSat 3557.556 kb on - strand, within zraSat 3557.597 kb on + strandat 3557.605 kb on - strandat 3557.605 kb on - strandat 3557.757 kb on + strandat 3557.814 kb on + strandat 3557.864 kb on + strandat 3557.964 kb on + strandat 3557.972 kb on - strandat 3558.024 kb on - strandat 3558.106 kb on + strandat 3558.111 kb on + strandat 3558.119 kb on - strandat 3558.153 kb on + strandat 3558.153 kb on + strandat 3558.153 kb on + strandat 3558.153 kb on + strandat 3558.153 kb on + strandat 3558.161 kb on - strandat 3558.161 kb on - strandat 3558.277 kb on - strandat 3558.287 kb on - strandat 3558.325 kb on - strandat 3558.330 kb on + strandat 3558.355 kb on - strandat 3558.359 kb on + strandat 3558.425 kb on + strand, within zraPat 3558.467 kb on + strand, within zraPat 3558.468 kb on + strand, within zraPat 3558.486 kb on - strand, within zraPat 3558.490 kb on + strand, within zraPat 3558.493 kb on - strand, within zraPat 3558.498 kb on - strand, within zraPat 3558.498 kb on - strand, within zraPat 3558.500 kb on + strand, within zraPat 3558.524 kb on + strand, within zraPat 3558.542 kb on - strand, within zraPat 3558.553 kb on + strand, within zraPat 3558.580 kb on + strand, within zraPat 3558.580 kb on + strand, within zraPat 3558.588 kb on - strand, within zraPat 3558.611 kb on + strand, within zraPat 3558.622 kb on + strand, within zraPat 3558.630 kb on - strand, within zraPat 3558.634 kb on + strand, within zraPat 3558.642 kb on - strand, within zraPat 3558.664 kb on + strand, within zraPat 3558.685 kb on + strand, within zraPat 3558.688 kb on - strand, within zraPat 3558.764 kb on - strand, within zraPat 3558.764 kb on - strand, within zraPat 3558.857 kb on + strandat 3558.894 kb on + strandat 3558.894 kb on + strandat 3558.959 kb on - strandat 3558.965 kb on + strandat 3559.038 kb on - strandat 3559.052 kb on + strandat 3559.052 kb on + strandat 3559.052 kb on - strandat 3559.054 kb on + strandat 3559.060 kb on - strandat 3559.060 kb on - strandat 3559.060 kb on - strandat 3559.060 kb on - strandat 3559.088 kb on - strandat 3559.148 kb on + strandat 3559.150 kb on - strandat 3559.156 kb on - strandat 3559.156 kb on - strandat 3559.315 kb on + strandat 3559.321 kb on + strandat 3559.323 kb on - strandat 3559.330 kb on + strandat 3559.415 kb on + strandat 3559.463 kb on + strandat 3559.504 kb on - strandat 3559.557 kb on + strandat 3559.589 kb on + strand, within DVU3386at 3559.589 kb on + strand, within DVU3386at 3559.589 kb on + strand, within DVU3386at 3559.589 kb on + strand, within DVU3386at 3559.589 kb on + strand, within DVU3386at 3559.597 kb on - strand, within DVU3386at 3559.597 kb on - strand, within DVU3386at 3559.597 kb on - strand, within DVU3386at 3559.597 kb on - strand, within DVU3386at 3559.597 kb on - strand, within DVU3386at 3559.597 kb on - strand, within DVU3386at 3559.597 kb on - strand, within DVU3386at 3559.597 kb on - strand, within DVU3386at 3559.610 kb on + strand, within DVU3386at 3559.689 kb on - strand, within DVU3386at 3559.879 kb on + strand, within DVU3386

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactate-Sulfate (60-30 mM) minimal (MoLS4)
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3,557,363 + zraS DVU3382 0.80 -1.1
3,557,368 + zraS DVU3382 0.80 -0.2
3,557,371 - zraS DVU3382 0.80 -0.4
3,557,391 - zraS DVU3382 0.81 -0.2
3,557,410 - zraS DVU3382 0.82 -0.3
3,557,418 + zraS DVU3382 0.83 +1.6
3,557,421 - zraS DVU3382 0.83 +0.9
3,557,423 + zraS DVU3382 0.83 -0.1
3,557,423 + zraS DVU3382 0.83 -1.4
3,557,426 - zraS DVU3382 0.83 -0.7
3,557,426 - zraS DVU3382 0.83 +0.2
3,557,428 + zraS DVU3382 0.83 -0.4
3,557,444 + zraS DVU3382 0.84 -0.1
3,557,482 + zraS DVU3382 0.86 -0.9
3,557,548 + zraS DVU3382 0.89 +1.0
3,557,556 - zraS DVU3382 0.89 +0.3
3,557,597 + -0.3
3,557,605 - -0.3
3,557,605 - -0.4
3,557,757 + -1.1
3,557,814 + -0.3
3,557,864 + -0.2
3,557,964 + -0.7
3,557,972 - -1.6
3,558,024 - -1.5
3,558,106 + -0.3
3,558,111 + +0.1
3,558,119 - -0.2
3,558,153 + +0.3
3,558,153 + +0.2
3,558,153 + +0.0
3,558,153 + +0.4
3,558,153 + +0.1
3,558,161 - -0.1
3,558,161 - -0.1
3,558,277 - -1.1
3,558,287 - -0.3
3,558,325 - +0.1
3,558,330 + +0.6
3,558,355 - -0.5
3,558,359 + +0.2
3,558,425 + zraP DVU3384 0.12 -1.9
3,558,467 + zraP DVU3384 0.20 -0.4
3,558,468 + zraP DVU3384 0.20 -0.0
3,558,486 - zraP DVU3384 0.24 +1.2
3,558,490 + zraP DVU3384 0.25 -0.3
3,558,493 - zraP DVU3384 0.25 +0.7
3,558,498 - zraP DVU3384 0.26 +0.1
3,558,498 - zraP DVU3384 0.26 -1.6
3,558,500 + zraP DVU3384 0.26 -0.1
3,558,524 + zraP DVU3384 0.31 -0.0
3,558,542 - zraP DVU3384 0.34 +0.0
3,558,553 + zraP DVU3384 0.37 -0.7
3,558,580 + zraP DVU3384 0.42 +0.0
3,558,580 + zraP DVU3384 0.42 -1.0
3,558,588 - zraP DVU3384 0.43 +0.2
3,558,611 + zraP DVU3384 0.48 +0.7
3,558,622 + zraP DVU3384 0.50 -0.8
3,558,630 - zraP DVU3384 0.51 +1.0
3,558,634 + zraP DVU3384 0.52 -0.3
3,558,642 - zraP DVU3384 0.54 +0.2
3,558,664 + zraP DVU3384 0.58 -1.4
3,558,685 + zraP DVU3384 0.62 -0.3
3,558,688 - zraP DVU3384 0.62 -0.3
3,558,764 - zraP DVU3384 0.77 +0.1
3,558,764 - zraP DVU3384 0.77 +0.3
3,558,857 + -0.7
3,558,894 + -0.2
3,558,894 + -2.1
3,558,959 - -0.2
3,558,965 + -0.7
3,559,038 - -0.2
3,559,052 + -1.0
3,559,052 + -0.3
3,559,052 - +0.9
3,559,054 + +0.2
3,559,060 - -0.3
3,559,060 - +0.0
3,559,060 - -0.0
3,559,060 - -0.3
3,559,088 - +0.1
3,559,148 + -0.0
3,559,150 - -0.1
3,559,156 - -0.2
3,559,156 - -0.1
3,559,315 + -0.5
3,559,321 + +0.3
3,559,323 - -0.1
3,559,330 + -0.3
3,559,415 + +0.2
3,559,463 + +0.4
3,559,504 - +0.2
3,559,557 + -0.4
3,559,589 + DVU3386 0.10 -0.2
3,559,589 + DVU3386 0.10 +0.3
3,559,589 + DVU3386 0.10 -0.5
3,559,589 + DVU3386 0.10 +0.0
3,559,589 + DVU3386 0.10 -0.3
3,559,597 - DVU3386 0.11 +0.0
3,559,597 - DVU3386 0.11 -0.8
3,559,597 - DVU3386 0.11 +0.1
3,559,597 - DVU3386 0.11 +0.4
3,559,597 - DVU3386 0.11 -0.6
3,559,597 - DVU3386 0.11 -0.3
3,559,597 - DVU3386 0.11 +1.5
3,559,597 - DVU3386 0.11 -0.6
3,559,610 + DVU3386 0.12 -0.0
3,559,689 - DVU3386 0.17 -0.2
3,559,879 + DVU3386 0.31 -1.4

Or see this region's nucleotide sequence