Strain Fitness in Erwinia tracheiphila HP pepo 2.2 around IJEDHG_06600

Experiment: plant=Squash; plant sample=QP3; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP3; plant location=NA
1,051,647	+		IJEDHG_06595	0.31	+0.5
1,051,651	+		IJEDHG_06595	0.31	+0.2
1,051,694	-		IJEDHG_06595	0.36	-0.1
1,051,700	+		IJEDHG_06595	0.37	-0.6
1,051,777	+		IJEDHG_06595	0.44	+3.0
1,051,777	+		IJEDHG_06595	0.44	+0.5
1,051,778	-		IJEDHG_06595	0.45	-0.2
1,051,781	+		IJEDHG_06595	0.45	+0.0
1,051,782	-		IJEDHG_06595	0.45	+0.8
1,051,782	-		IJEDHG_06595	0.45	+2.6
1,052,102	-		IJEDHG_06595	0.78	-0.4
1,052,266	-				-0.3
1,052,333	+				+0.3
1,052,466	+				-0.2
1,052,478	+				+1.1
1,052,491	+				-0.1
1,052,569	-				-0.8
1,052,585	-				+1.0
1,052,643	+	sstT	IJEDHG_06600	0.12	-0.2
1,052,644	-	sstT	IJEDHG_06600	0.12	-0.9
1,052,759	+	sstT	IJEDHG_06600	0.21	-0.6
1,052,942	+	sstT	IJEDHG_06600	0.36	-1.4
1,052,942	+	sstT	IJEDHG_06600	0.36	+0.6
1,052,942	+	sstT	IJEDHG_06600	0.36	-2.5
1,052,943	-	sstT	IJEDHG_06600	0.36	-0.4
1,052,943	-	sstT	IJEDHG_06600	0.36	-1.5
1,052,943	-	sstT	IJEDHG_06600	0.36	+0.0
1,052,943	-	sstT	IJEDHG_06600	0.36	-2.2
1,053,051	+	sstT	IJEDHG_06600	0.45	-1.4
1,053,052	-	sstT	IJEDHG_06600	0.45	-1.6
1,053,056	-	sstT	IJEDHG_06600	0.45	-0.3
1,053,103	+	sstT	IJEDHG_06600	0.49	+1.5
1,053,104	-	sstT	IJEDHG_06600	0.49	+1.1
1,053,140	+	sstT	IJEDHG_06600	0.52	+0.9
1,053,140	+	sstT	IJEDHG_06600	0.52	+0.1
1,053,140	+	sstT	IJEDHG_06600	0.52	+3.7
1,053,141	-	sstT	IJEDHG_06600	0.52	-0.5
1,053,141	-	sstT	IJEDHG_06600	0.52	+0.1
1,053,141	-	sstT	IJEDHG_06600	0.52	-0.9
1,053,146	+	sstT	IJEDHG_06600	0.52	+0.9
1,053,166	-	sstT	IJEDHG_06600	0.54	+2.0
1,053,172	+	sstT	IJEDHG_06600	0.55	-0.1
1,053,172	+	sstT	IJEDHG_06600	0.55	-0.7
1,053,173	-	sstT	IJEDHG_06600	0.55	-0.7
1,053,173	-	sstT	IJEDHG_06600	0.55	+0.4
1,053,173	-	sstT	IJEDHG_06600	0.55	+4.1
1,053,173	-	sstT	IJEDHG_06600	0.55	-0.1
1,053,203	-	sstT	IJEDHG_06600	0.57	+1.0
1,053,250	+	sstT	IJEDHG_06600	0.61	+1.4
1,053,293	-	sstT	IJEDHG_06600	0.64	+0.5
1,053,319	+	sstT	IJEDHG_06600	0.66	-0.1
1,053,346	-	sstT	IJEDHG_06600	0.69	+0.2
1,053,360	-	sstT	IJEDHG_06600	0.70	+0.2
1,053,388	+	sstT	IJEDHG_06600	0.72	-0.0
1,053,388	+	sstT	IJEDHG_06600	0.72	-1.9
1,053,388	+	sstT	IJEDHG_06600	0.72	+0.2
1,053,388	+	sstT	IJEDHG_06600	0.72	+0.0
1,053,395	-	sstT	IJEDHG_06600	0.72	+0.8
1,053,415	+	sstT	IJEDHG_06600	0.74	+1.0
1,053,415	+	sstT	IJEDHG_06600	0.74	-1.6
1,053,416	-	sstT	IJEDHG_06600	0.74	-0.2
1,053,416	-	sstT	IJEDHG_06600	0.74	+1.2
1,053,416	-	sstT	IJEDHG_06600	0.74	+0.6
1,053,568	+	sstT	IJEDHG_06600	0.86	+0.2
1,053,568	+	sstT	IJEDHG_06600	0.86	-1.8
1,053,568	+	sstT	IJEDHG_06600	0.86	-2.0
1,053,568	+	sstT	IJEDHG_06600	0.86	+0.2
1,053,569	-	sstT	IJEDHG_06600	0.86	-1.0
1,053,683	-				-0.6
1,053,791	+				-0.5
1,053,867	+				-0.4
1,053,897	-				-2.4
1,053,912	+				-0.8
1,053,913	-				+0.5
1,053,917	+				-1.9
1,054,000	+				+2.6
1,054,000	+				-0.0
1,054,001	-				+0.7
1,054,031	+				+1.0
1,054,087	+				-0.3
1,054,091	+				+0.5
1,054,115	-				-0.0
1,054,127	+				-0.6
1,054,127	+				-0.4
1,054,127	+				-0.4
1,054,128	-				+1.0
1,054,128	-				+2.6
1,054,130	-				+0.3
1,054,131	+				-2.7
1,054,144	+				+0.6
1,054,335	-				-0.7
1,054,489	-		IJEDHG_06605	0.13	+0.9
1,054,563	+		IJEDHG_06605	0.24	-0.3
1,054,563	+		IJEDHG_06605	0.24	-1.4
1,054,564	-		IJEDHG_06605	0.24	-1.4
1,054,660	+		IJEDHG_06605	0.39	+0.6
1,054,660	+		IJEDHG_06605	0.39	-0.9
1,054,660	+		IJEDHG_06605	0.39	+0.3
1,054,660	+		IJEDHG_06605	0.39	+0.6
1,054,660	+		IJEDHG_06605	0.39	-1.1
1,054,687	-		IJEDHG_06605	0.43	+0.8
1,054,729	+		IJEDHG_06605	0.49	-0.9
1,054,730	-		IJEDHG_06605	0.49	+0.5
1,054,730	-		IJEDHG_06605	0.49	+0.9