Strain Fitness in Erwinia tracheiphila HP pepo 2.2 around IJEDHG_02740

Experiment: plant=Squash; plant sample=QP2; plant location=NA

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIJEDHG_02735 and IJEDHG_02740 are separated by 740 nucleotidesIJEDHG_02740 and IJEDHG_02745 are separated by 367 nucleotidesIJEDHG_02745 and der are separated by 199 nucleotides IJEDHG_02735: IJEDHG_02735 - hypothetical protein, at 390,739 to 390,972 _02735 IJEDHG_02740: IJEDHG_02740 - Glucose/quinate/shikimate family membrane-bound PQQ-dependent dehydrogenase, at 391,713 to 394,145 _02740 IJEDHG_02745: IJEDHG_02745 - primosomal protein N' (replication factor Y) - superfamily II helicase, at 394,513 to 394,731 _02745 IJEDHG_02750: der - ribosome biogenesis GTPase Der, at 394,931 to 396,415 der Position (kb) 391 392 393 394 395Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 390.878 kb on + strand, within IJEDHG_02735at 390.879 kb on - strand, within IJEDHG_02735at 390.879 kb on - strand, within IJEDHG_02735at 390.953 kb on - strandat 390.984 kb on - strandat 391.085 kb on - strandat 391.103 kb on - strandat 391.129 kb on - strandat 391.261 kb on + strandat 391.317 kb on + strandat 391.317 kb on + strandat 391.358 kb on - strandat 391.358 kb on - strandat 391.407 kb on - strandat 391.407 kb on - strandat 391.427 kb on + strandat 391.438 kb on - strandat 391.456 kb on - strandat 391.460 kb on + strandat 391.567 kb on - strandat 391.640 kb on - strandat 391.668 kb on + strandat 391.668 kb on + strandat 391.673 kb on - strandat 391.714 kb on + strandat 391.714 kb on + strandat 391.714 kb on + strandat 391.715 kb on - strandat 391.718 kb on + strandat 391.741 kb on + strandat 391.793 kb on - strandat 391.820 kb on - strandat 391.820 kb on - strandat 391.820 kb on - strandat 391.903 kb on + strandat 391.903 kb on + strandat 391.906 kb on + strandat 391.925 kb on + strandat 391.930 kb on - strandat 391.930 kb on - strandat 391.930 kb on - strandat 391.974 kb on - strand, within IJEDHG_02740at 392.067 kb on + strand, within IJEDHG_02740at 392.153 kb on - strand, within IJEDHG_02740at 392.273 kb on + strand, within IJEDHG_02740at 392.274 kb on - strand, within IJEDHG_02740at 392.290 kb on + strand, within IJEDHG_02740at 392.315 kb on + strand, within IJEDHG_02740at 392.316 kb on - strand, within IJEDHG_02740at 392.383 kb on + strand, within IJEDHG_02740at 392.395 kb on + strand, within IJEDHG_02740at 392.525 kb on - strand, within IJEDHG_02740at 392.525 kb on - strand, within IJEDHG_02740at 392.608 kb on + strand, within IJEDHG_02740at 392.608 kb on + strand, within IJEDHG_02740at 392.609 kb on - strand, within IJEDHG_02740at 392.609 kb on - strand, within IJEDHG_02740at 392.734 kb on + strand, within IJEDHG_02740at 392.735 kb on - strand, within IJEDHG_02740at 392.789 kb on - strand, within IJEDHG_02740at 392.789 kb on - strand, within IJEDHG_02740at 392.789 kb on - strand, within IJEDHG_02740at 392.792 kb on + strand, within IJEDHG_02740at 392.793 kb on - strand, within IJEDHG_02740at 392.793 kb on - strand, within IJEDHG_02740at 392.847 kb on - strand, within IJEDHG_02740at 392.878 kb on + strand, within IJEDHG_02740at 392.885 kb on + strand, within IJEDHG_02740at 392.886 kb on - strand, within IJEDHG_02740at 392.915 kb on + strand, within IJEDHG_02740at 392.918 kb on - strand, within IJEDHG_02740at 393.106 kb on + strand, within IJEDHG_02740at 393.335 kb on - strand, within IJEDHG_02740at 393.434 kb on + strand, within IJEDHG_02740at 393.514 kb on - strand, within IJEDHG_02740at 393.514 kb on - strand, within IJEDHG_02740at 393.519 kb on + strand, within IJEDHG_02740at 393.519 kb on + strand, within IJEDHG_02740at 393.519 kb on + strand, within IJEDHG_02740at 393.519 kb on + strand, within IJEDHG_02740at 393.522 kb on - strand, within IJEDHG_02740at 393.623 kb on - strand, within IJEDHG_02740at 393.764 kb on - strand, within IJEDHG_02740at 393.764 kb on - strand, within IJEDHG_02740at 393.788 kb on + strand, within IJEDHG_02740at 393.789 kb on - strand, within IJEDHG_02740at 393.801 kb on - strand, within IJEDHG_02740at 393.805 kb on - strand, within IJEDHG_02740at 393.805 kb on - strand, within IJEDHG_02740at 393.933 kb on - strandat 394.185 kb on - strandat 394.529 kb on + strandat 394.530 kb on - strandat 394.583 kb on - strand, within IJEDHG_02745at 394.583 kb on - strand, within IJEDHG_02745at 394.731 kb on + strandat 394.754 kb on - strandat 394.755 kb on + strandat 394.756 kb on - strandat 394.855 kb on + strandat 394.855 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP2; plant location=NA
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390,878 + IJEDHG_02735 0.59 +2.2
390,879 - IJEDHG_02735 0.60 +0.7
390,879 - IJEDHG_02735 0.60 +1.0
390,953 - -0.3
390,984 - +1.4
391,085 - -1.0
391,103 - +2.0
391,129 - -0.6
391,261 + +1.5
391,317 + -2.0
391,317 + +0.2
391,358 - +0.6
391,358 - +1.1
391,407 - -1.9
391,407 - -0.9
391,427 + +0.0
391,438 - -0.2
391,456 - +1.2
391,460 + -0.3
391,567 - +1.3
391,640 - +0.2
391,668 + -1.9
391,668 + +2.0
391,673 - -0.4
391,714 + +1.0
391,714 + -0.2
391,714 + -0.2
391,715 - -0.0
391,718 + -0.8
391,741 + +0.1
391,793 - +1.1
391,820 - -1.3
391,820 - -1.8
391,820 - +1.0
391,903 + +0.4
391,903 + -0.0
391,906 + +0.0
391,925 + +0.8
391,930 - -0.8
391,930 - +0.1
391,930 - -1.3
391,974 - IJEDHG_02740 0.11 +0.7
392,067 + IJEDHG_02740 0.15 -1.1
392,153 - IJEDHG_02740 0.18 -0.9
392,273 + IJEDHG_02740 0.23 -0.1
392,274 - IJEDHG_02740 0.23 +0.3
392,290 + IJEDHG_02740 0.24 +1.2
392,315 + IJEDHG_02740 0.25 -1.0
392,316 - IJEDHG_02740 0.25 +1.6
392,383 + IJEDHG_02740 0.28 -1.3
392,395 + IJEDHG_02740 0.28 +0.8
392,525 - IJEDHG_02740 0.33 +0.5
392,525 - IJEDHG_02740 0.33 +0.0
392,608 + IJEDHG_02740 0.37 -0.1
392,608 + IJEDHG_02740 0.37 +0.9
392,609 - IJEDHG_02740 0.37 +0.3
392,609 - IJEDHG_02740 0.37 -0.6
392,734 + IJEDHG_02740 0.42 -0.1
392,735 - IJEDHG_02740 0.42 +1.7
392,789 - IJEDHG_02740 0.44 -1.6
392,789 - IJEDHG_02740 0.44 -0.4
392,789 - IJEDHG_02740 0.44 -1.8
392,792 + IJEDHG_02740 0.44 +0.6
392,793 - IJEDHG_02740 0.44 +0.3
392,793 - IJEDHG_02740 0.44 +0.8
392,847 - IJEDHG_02740 0.47 -0.9
392,878 + IJEDHG_02740 0.48 -1.8
392,885 + IJEDHG_02740 0.48 +0.5
392,886 - IJEDHG_02740 0.48 -1.2
392,915 + IJEDHG_02740 0.49 -0.4
392,918 - IJEDHG_02740 0.50 +0.4
393,106 + IJEDHG_02740 0.57 +0.7
393,335 - IJEDHG_02740 0.67 +1.3
393,434 + IJEDHG_02740 0.71 -0.0
393,514 - IJEDHG_02740 0.74 +0.5
393,514 - IJEDHG_02740 0.74 -1.2
393,519 + IJEDHG_02740 0.74 -0.3
393,519 + IJEDHG_02740 0.74 -1.0
393,519 + IJEDHG_02740 0.74 +5.0
393,519 + IJEDHG_02740 0.74 -1.5
393,522 - IJEDHG_02740 0.74 -0.3
393,623 - IJEDHG_02740 0.79 +0.0
393,764 - IJEDHG_02740 0.84 +0.4
393,764 - IJEDHG_02740 0.84 -0.7
393,788 + IJEDHG_02740 0.85 +1.5
393,789 - IJEDHG_02740 0.85 -1.2
393,801 - IJEDHG_02740 0.86 +0.3
393,805 - IJEDHG_02740 0.86 -2.6
393,805 - IJEDHG_02740 0.86 +0.8
393,933 - +0.7
394,185 - -0.1
394,529 + +0.5
394,530 - -0.9
394,583 - IJEDHG_02745 0.32 -1.2
394,583 - IJEDHG_02745 0.32 -1.8
394,731 + -0.3
394,754 - -0.5
394,755 + +1.7
394,756 - +0.8
394,855 + -0.7
394,855 + +0.6

Or see this region's nucleotide sequence