Experiment: plant=Melon; plant sample=MP2; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt arnB and IJEDHG_02610 are separated by 600 nucleotides IJEDHG_02610 and IJEDHG_02615 are separated by 177 nucleotides
IJEDHG_02605: arnB - UDP-4-amino-4-deoxy-L-arabinose aminotransferase, at 360,161 to 361,312
arnB
IJEDHG_02610: IJEDHG_02610 - hypothetical protein, at 361,913 to 362,050
_02610
IJEDHG_02615: IJEDHG_02615 - ABC-type xenobiotic transporter, at 362,228 to 364,351
_02615
Position (kb) 361
362
363 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 360.924 kb on + strand, within arnB at 360.924 kb on + strand, within arnB at 360.925 kb on - strand, within arnB at 360.925 kb on - strand, within arnB at 360.925 kb on - strand, within arnB at 360.929 kb on + strand, within arnB at 360.930 kb on - strand, within arnB at 361.313 kb on - strand at 361.366 kb on + strand at 361.412 kb on - strand at 361.476 kb on + strand at 361.478 kb on + strand at 361.479 kb on - strand at 361.546 kb on - strand at 361.546 kb on - strand at 361.616 kb on - strand at 361.685 kb on - strand at 361.695 kb on + strand at 361.696 kb on - strand at 361.697 kb on + strand at 361.697 kb on + strand at 361.842 kb on + strand at 361.850 kb on + strand at 361.851 kb on - strand at 362.053 kb on + strand at 362.053 kb on + strand at 362.054 kb on - strand at 362.054 kb on - strand at 362.109 kb on - strand at 362.119 kb on - strand at 362.229 kb on + strand at 362.255 kb on + strand at 362.261 kb on - strand at 362.261 kb on - strand at 362.287 kb on + strand at 362.346 kb on - strand at 362.418 kb on - strand at 362.418 kb on - strand at 362.484 kb on - strand, within IJEDHG_02615 at 362.528 kb on - strand, within IJEDHG_02615 at 362.528 kb on - strand, within IJEDHG_02615 at 362.528 kb on - strand, within IJEDHG_02615 at 362.528 kb on - strand, within IJEDHG_02615 at 362.528 kb on - strand, within IJEDHG_02615 at 362.590 kb on + strand, within IJEDHG_02615 at 362.804 kb on - strand, within IJEDHG_02615 at 362.810 kb on - strand, within IJEDHG_02615 at 362.966 kb on + strand, within IJEDHG_02615
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=MP2; plant location=NA remove 360,924 + arnB IJEDHG_02605 0.66 -0.1 360,924 + arnB IJEDHG_02605 0.66 -0.4 360,925 - arnB IJEDHG_02605 0.66 -1.0 360,925 - arnB IJEDHG_02605 0.66 -1.1 360,925 - arnB IJEDHG_02605 0.66 -1.6 360,929 + arnB IJEDHG_02605 0.67 -1.3 360,930 - arnB IJEDHG_02605 0.67 -0.0 361,313 - -0.9 361,366 + -0.8 361,412 - +0.8 361,476 + -0.6 361,478 + -0.4 361,479 - +1.4 361,546 - +0.1 361,546 - +0.1 361,616 - -1.4 361,685 - +0.7 361,695 + -0.8 361,696 - -0.2 361,697 + +0.5 361,697 + -0.4 361,842 + -0.0 361,850 + +1.5 361,851 - +0.3 362,053 + -1.3 362,053 + +0.1 362,054 - +1.9 362,054 - -2.8 362,109 - -3.0 362,119 - +0.5 362,229 + -0.1 362,255 + -1.5 362,261 - +1.0 362,261 - +0.3 362,287 + -0.1 362,346 - -2.4 362,418 - +0.3 362,418 - +1.3 362,484 - IJEDHG_02615 0.12 +0.6 362,528 - IJEDHG_02615 0.14 +0.7 362,528 - IJEDHG_02615 0.14 +0.1 362,528 - IJEDHG_02615 0.14 -0.1 362,528 - IJEDHG_02615 0.14 -2.5 362,528 - IJEDHG_02615 0.14 +1.0 362,590 + IJEDHG_02615 0.17 +1.0 362,804 - IJEDHG_02615 0.27 +0.2 362,810 - IJEDHG_02615 0.27 +0.7 362,966 + IJEDHG_02615 0.35 -2.1
Or see this region's nucleotide sequence