Experiment: plant=Melon; plant sample=MP2; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt arnA and arnC overlap by 1 nucleotides arnC and arnB overlap by 11 nucleotides
IJEDHG_02595: arnA - bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA, at 357,209 to 359,191
arnA
IJEDHG_02600: arnC - undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase, at 359,191 to 360,171
arnC
IJEDHG_02605: arnB - UDP-4-amino-4-deoxy-L-arabinose aminotransferase, at 360,161 to 361,312
arnB
Position (kb) 359
360
361 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 358.208 kb on - strand, within arnA at 358.333 kb on + strand, within arnA at 358.336 kb on - strand, within arnA at 358.336 kb on - strand, within arnA at 358.336 kb on - strand, within arnA at 358.336 kb on - strand, within arnA at 358.336 kb on - strand, within arnA at 358.471 kb on + strand, within arnA at 358.537 kb on + strand, within arnA at 358.861 kb on - strand, within arnA at 358.861 kb on - strand, within arnA at 359.102 kb on - strand at 359.245 kb on - strand at 359.245 kb on - strand at 359.276 kb on + strand at 359.276 kb on + strand at 359.276 kb on + strand at 359.277 kb on - strand at 359.277 kb on - strand at 359.277 kb on - strand at 359.277 kb on - strand at 359.277 kb on - strand at 359.277 kb on - strand at 359.277 kb on - strand at 359.280 kb on + strand at 359.280 kb on + strand at 359.292 kb on - strand, within arnC at 359.292 kb on - strand, within arnC at 359.292 kb on - strand, within arnC at 359.292 kb on - strand, within arnC at 359.464 kb on - strand, within arnC at 359.469 kb on + strand, within arnC at 359.469 kb on + strand, within arnC at 359.469 kb on + strand, within arnC at 359.470 kb on - strand, within arnC at 359.470 kb on - strand, within arnC at 359.481 kb on + strand, within arnC at 359.484 kb on + strand, within arnC at 359.507 kb on + strand, within arnC at 359.507 kb on + strand, within arnC at 359.507 kb on + strand, within arnC at 359.508 kb on - strand, within arnC at 359.628 kb on + strand, within arnC at 359.628 kb on + strand, within arnC at 359.688 kb on + strand, within arnC at 359.688 kb on + strand, within arnC at 359.688 kb on + strand, within arnC at 359.689 kb on - strand, within arnC at 359.689 kb on - strand, within arnC at 359.689 kb on - strand, within arnC at 359.740 kb on + strand, within arnC at 359.761 kb on - strand, within arnC at 359.804 kb on - strand, within arnC at 359.920 kb on - strand, within arnC at 359.920 kb on - strand, within arnC at 359.939 kb on + strand, within arnC at 359.939 kb on + strand, within arnC at 359.940 kb on - strand, within arnC at 360.050 kb on + strand, within arnC at 360.065 kb on - strand, within arnC at 360.082 kb on - strand at 360.095 kb on - strand at 360.133 kb on + strand at 360.134 kb on - strand at 360.150 kb on + strand at 360.153 kb on + strand at 360.153 kb on + strand at 360.202 kb on + strand at 360.243 kb on - strand at 360.259 kb on + strand at 360.260 kb on - strand at 360.319 kb on - strand, within arnB at 360.589 kb on + strand, within arnB at 360.607 kb on - strand, within arnB at 360.610 kb on + strand, within arnB at 360.611 kb on - strand, within arnB at 360.611 kb on - strand, within arnB at 360.764 kb on - strand, within arnB at 360.823 kb on + strand, within arnB at 360.826 kb on - strand, within arnB at 360.924 kb on + strand, within arnB at 360.924 kb on + strand, within arnB at 360.925 kb on - strand, within arnB at 360.925 kb on - strand, within arnB at 360.925 kb on - strand, within arnB at 360.929 kb on + strand, within arnB at 360.930 kb on - strand, within arnB
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=MP2; plant location=NA remove 358,208 - arnA IJEDHG_02595 0.50 +2.1 358,333 + arnA IJEDHG_02595 0.57 -1.4 358,336 - arnA IJEDHG_02595 0.57 -0.7 358,336 - arnA IJEDHG_02595 0.57 -0.4 358,336 - arnA IJEDHG_02595 0.57 +0.3 358,336 - arnA IJEDHG_02595 0.57 -0.3 358,336 - arnA IJEDHG_02595 0.57 -1.5 358,471 + arnA IJEDHG_02595 0.64 -0.2 358,537 + arnA IJEDHG_02595 0.67 +0.5 358,861 - arnA IJEDHG_02595 0.83 -0.1 358,861 - arnA IJEDHG_02595 0.83 -2.4 359,102 - -1.1 359,245 - -1.7 359,245 - -0.5 359,276 + -2.7 359,276 + +0.6 359,276 + -1.5 359,277 - -0.8 359,277 - +0.3 359,277 - +1.3 359,277 - +0.3 359,277 - -0.0 359,277 - -2.1 359,277 - +0.5 359,280 + +0.6 359,280 + -2.1 359,292 - arnC IJEDHG_02600 0.10 +1.3 359,292 - arnC IJEDHG_02600 0.10 +0.6 359,292 - arnC IJEDHG_02600 0.10 -0.6 359,292 - arnC IJEDHG_02600 0.10 -0.7 359,464 - arnC IJEDHG_02600 0.28 +1.5 359,469 + arnC IJEDHG_02600 0.28 -1.0 359,469 + arnC IJEDHG_02600 0.28 +0.1 359,469 + arnC IJEDHG_02600 0.28 -1.5 359,470 - arnC IJEDHG_02600 0.28 -1.1 359,470 - arnC IJEDHG_02600 0.28 -0.8 359,481 + arnC IJEDHG_02600 0.30 -1.5 359,484 + arnC IJEDHG_02600 0.30 +2.6 359,507 + arnC IJEDHG_02600 0.32 +0.3 359,507 + arnC IJEDHG_02600 0.32 -0.0 359,507 + arnC IJEDHG_02600 0.32 +0.7 359,508 - arnC IJEDHG_02600 0.32 +1.1 359,628 + arnC IJEDHG_02600 0.45 -1.8 359,628 + arnC IJEDHG_02600 0.45 +0.4 359,688 + arnC IJEDHG_02600 0.51 -0.1 359,688 + arnC IJEDHG_02600 0.51 -0.3 359,688 + arnC IJEDHG_02600 0.51 -0.6 359,689 - arnC IJEDHG_02600 0.51 -0.6 359,689 - arnC IJEDHG_02600 0.51 -1.4 359,689 - arnC IJEDHG_02600 0.51 -3.1 359,740 + arnC IJEDHG_02600 0.56 -1.8 359,761 - arnC IJEDHG_02600 0.58 +0.3 359,804 - arnC IJEDHG_02600 0.62 -1.7 359,920 - arnC IJEDHG_02600 0.74 +1.0 359,920 - arnC IJEDHG_02600 0.74 -0.8 359,939 + arnC IJEDHG_02600 0.76 -0.5 359,939 + arnC IJEDHG_02600 0.76 +0.2 359,940 - arnC IJEDHG_02600 0.76 +0.3 360,050 + arnC IJEDHG_02600 0.88 +0.7 360,065 - arnC IJEDHG_02600 0.89 +0.0 360,082 - -0.8 360,095 - -1.1 360,133 + +0.7 360,134 - -1.3 360,150 + -0.6 360,153 + +0.1 360,153 + -0.3 360,202 + -2.5 360,243 - -0.8 360,259 + -1.8 360,260 - +0.4 360,319 - arnB IJEDHG_02605 0.14 +0.5 360,589 + arnB IJEDHG_02605 0.37 -0.7 360,607 - arnB IJEDHG_02605 0.39 -2.0 360,610 + arnB IJEDHG_02605 0.39 -1.2 360,611 - arnB IJEDHG_02605 0.39 -1.5 360,611 - arnB IJEDHG_02605 0.39 -1.6 360,764 - arnB IJEDHG_02605 0.52 +1.0 360,823 + arnB IJEDHG_02605 0.57 -2.0 360,826 - arnB IJEDHG_02605 0.58 -0.5 360,924 + arnB IJEDHG_02605 0.66 -0.1 360,924 + arnB IJEDHG_02605 0.66 -0.4 360,925 - arnB IJEDHG_02605 0.66 -1.0 360,925 - arnB IJEDHG_02605 0.66 -1.1 360,925 - arnB IJEDHG_02605 0.66 -1.6 360,929 + arnB IJEDHG_02605 0.67 -1.3 360,930 - arnB IJEDHG_02605 0.67 -0.0
Or see this region's nucleotide sequence