Experiment: plant=Melon; plant sample=MP1; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IJEDHG_26170 and aroL are separated by 702 nucleotides aroL and IJEDHG_26180 are separated by 306 nucleotides
IJEDHG_26170: IJEDHG_26170 - AroM protein, at 4,511,001 to 4,511,822
_26170
IJEDHG_26175: aroL - shikimate kinase AroL, at 4,512,525 to 4,513,049
aroL
IJEDHG_26180: IJEDHG_26180 - DUF2076 domain-containing protein, at 4,513,356 to 4,514,063
_26180
Position (kb) 4512
4513
4514 Strain fitness (log2 ratio) -2
-1
0
1 at 4511.656 kb on - strand, within IJEDHG_26170 at 4511.656 kb on - strand, within IJEDHG_26170 at 4511.741 kb on + strand at 4511.741 kb on + strand at 4511.741 kb on + strand at 4511.742 kb on - strand at 4511.786 kb on + strand at 4511.786 kb on + strand at 4511.787 kb on - strand at 4511.838 kb on + strand at 4511.839 kb on - strand at 4511.889 kb on + strand at 4512.004 kb on + strand at 4512.004 kb on + strand at 4512.005 kb on - strand at 4512.005 kb on - strand at 4512.005 kb on - strand at 4512.005 kb on - strand at 4512.005 kb on - strand at 4512.029 kb on - strand at 4512.048 kb on - strand at 4512.159 kb on - strand at 4512.269 kb on - strand at 4512.356 kb on + strand at 4512.359 kb on + strand at 4512.359 kb on + strand at 4512.560 kb on + strand at 4512.567 kb on + strand at 4512.568 kb on - strand at 4512.568 kb on - strand at 4512.604 kb on + strand, within aroL at 4512.604 kb on + strand, within aroL at 4512.604 kb on + strand, within aroL at 4512.733 kb on - strand, within aroL at 4512.733 kb on - strand, within aroL at 4512.755 kb on - strand, within aroL at 4512.759 kb on - strand, within aroL at 4512.759 kb on - strand, within aroL at 4512.871 kb on - strand, within aroL at 4513.033 kb on + strand at 4513.049 kb on + strand at 4513.098 kb on - strand at 4513.139 kb on - strand at 4513.139 kb on - strand at 4513.281 kb on - strand at 4513.281 kb on - strand at 4513.281 kb on - strand at 4513.324 kb on + strand at 4513.330 kb on + strand at 4513.330 kb on + strand at 4513.494 kb on + strand, within IJEDHG_26180 at 4513.495 kb on - strand, within IJEDHG_26180 at 4513.495 kb on - strand, within IJEDHG_26180 at 4513.541 kb on + strand, within IJEDHG_26180 at 4513.817 kb on - strand, within IJEDHG_26180 at 4513.916 kb on + strand, within IJEDHG_26180 at 4513.925 kb on + strand, within IJEDHG_26180
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=MP1; plant location=NA remove 4,511,656 - IJEDHG_26170 0.80 +1.2 4,511,656 - IJEDHG_26170 0.80 +0.2 4,511,741 + +0.3 4,511,741 + -1.6 4,511,741 + -2.1 4,511,742 - -0.1 4,511,786 + -0.9 4,511,786 + -1.5 4,511,787 - +1.5 4,511,838 + +0.2 4,511,839 - +0.9 4,511,889 + -0.5 4,512,004 + -0.7 4,512,004 + +1.3 4,512,005 - -0.6 4,512,005 - -0.8 4,512,005 - +0.4 4,512,005 - +0.2 4,512,005 - -0.0 4,512,029 - -0.5 4,512,048 - -0.9 4,512,159 - -2.2 4,512,269 - -1.6 4,512,356 + -1.1 4,512,359 + +0.6 4,512,359 + +0.0 4,512,560 + +0.5 4,512,567 + -0.6 4,512,568 - +0.7 4,512,568 - -1.6 4,512,604 + aroL IJEDHG_26175 0.15 -1.4 4,512,604 + aroL IJEDHG_26175 0.15 +0.1 4,512,604 + aroL IJEDHG_26175 0.15 +0.5 4,512,733 - aroL IJEDHG_26175 0.40 +0.1 4,512,733 - aroL IJEDHG_26175 0.40 -0.2 4,512,755 - aroL IJEDHG_26175 0.44 +1.7 4,512,759 - aroL IJEDHG_26175 0.45 -0.5 4,512,759 - aroL IJEDHG_26175 0.45 +0.5 4,512,871 - aroL IJEDHG_26175 0.66 -0.3 4,513,033 + -0.5 4,513,049 + -0.8 4,513,098 - +0.0 4,513,139 - +0.6 4,513,139 - +0.6 4,513,281 - -0.8 4,513,281 - -1.4 4,513,281 - +0.8 4,513,324 + -2.1 4,513,330 + +1.1 4,513,330 + -0.2 4,513,494 + IJEDHG_26180 0.19 -0.8 4,513,495 - IJEDHG_26180 0.20 +0.2 4,513,495 - IJEDHG_26180 0.20 +1.0 4,513,541 + IJEDHG_26180 0.26 +1.0 4,513,817 - IJEDHG_26180 0.65 -0.7 4,513,916 + IJEDHG_26180 0.79 +0.8 4,513,925 + IJEDHG_26180 0.80 -0.7
Or see this region's nucleotide sequence