Experiment: plant=Melon; plant sample=MP1; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt motB and motA overlap by 4 nucleotides motA and flhC are separated by 131 nucleotides flhC and flhD overlap by 1 nucleotides
IJEDHG_24405: motB - flagellar motor protein MotB, at 4,216,520 to 4,217,560
motB
IJEDHG_24410: motA - flagellar motor stator protein MotA, at 4,217,557 to 4,218,444
motA
IJEDHG_24415: flhC - flagellar transcriptional regulator FlhC, at 4,218,576 to 4,219,154
flhC
IJEDHG_24420: flhD - flagellar transcriptional regulator FlhD, at 4,219,154 to 4,219,507
flhD
Position (kb) 4217
4218
4219 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4216.597 kb on + strand at 4216.598 kb on - strand at 4216.598 kb on - strand at 4216.640 kb on - strand, within motB at 4216.673 kb on + strand, within motB at 4216.854 kb on - strand, within motB at 4216.959 kb on + strand, within motB at 4217.003 kb on + strand, within motB at 4217.003 kb on + strand, within motB at 4217.049 kb on + strand, within motB at 4217.049 kb on + strand, within motB at 4217.050 kb on - strand, within motB at 4217.117 kb on + strand, within motB at 4217.184 kb on - strand, within motB at 4217.335 kb on + strand, within motB at 4217.473 kb on - strand at 4217.473 kb on - strand at 4217.540 kb on - strand at 4217.551 kb on + strand at 4217.788 kb on - strand, within motA at 4217.788 kb on - strand, within motA at 4217.825 kb on - strand, within motA at 4217.886 kb on + strand, within motA at 4218.055 kb on + strand, within motA at 4218.055 kb on + strand, within motA at 4218.060 kb on - strand, within motA at 4218.221 kb on + strand, within motA at 4218.222 kb on - strand, within motA at 4218.222 kb on - strand, within motA at 4218.235 kb on - strand, within motA at 4218.236 kb on + strand, within motA at 4218.236 kb on + strand, within motA at 4218.236 kb on + strand, within motA at 4218.237 kb on - strand, within motA at 4218.336 kb on + strand, within motA at 4218.401 kb on - strand at 4218.425 kb on + strand at 4218.436 kb on - strand at 4218.455 kb on + strand at 4218.638 kb on + strand, within flhC at 4218.867 kb on - strand, within flhC at 4218.944 kb on + strand, within flhC at 4218.996 kb on - strand, within flhC at 4219.024 kb on + strand, within flhC at 4219.025 kb on - strand, within flhC at 4219.025 kb on - strand, within flhC at 4219.025 kb on - strand, within flhC at 4219.098 kb on + strand at 4219.099 kb on - strand at 4219.208 kb on + strand, within flhD at 4219.208 kb on + strand, within flhD
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=MP1; plant location=NA remove 4,216,597 + +2.1 4,216,598 - -0.4 4,216,598 - +0.0 4,216,640 - motB IJEDHG_24405 0.12 -0.3 4,216,673 + motB IJEDHG_24405 0.15 -0.8 4,216,854 - motB IJEDHG_24405 0.32 -0.7 4,216,959 + motB IJEDHG_24405 0.42 +0.0 4,217,003 + motB IJEDHG_24405 0.46 +0.7 4,217,003 + motB IJEDHG_24405 0.46 -0.4 4,217,049 + motB IJEDHG_24405 0.51 -0.0 4,217,049 + motB IJEDHG_24405 0.51 +0.2 4,217,050 - motB IJEDHG_24405 0.51 -0.5 4,217,117 + motB IJEDHG_24405 0.57 -2.3 4,217,184 - motB IJEDHG_24405 0.64 -2.0 4,217,335 + motB IJEDHG_24405 0.78 +0.4 4,217,473 - +0.2 4,217,473 - -1.7 4,217,540 - -0.8 4,217,551 + -1.3 4,217,788 - motA IJEDHG_24410 0.26 -0.5 4,217,788 - motA IJEDHG_24410 0.26 -0.7 4,217,825 - motA IJEDHG_24410 0.30 -0.1 4,217,886 + motA IJEDHG_24410 0.37 -1.9 4,218,055 + motA IJEDHG_24410 0.56 -0.1 4,218,055 + motA IJEDHG_24410 0.56 +1.0 4,218,060 - motA IJEDHG_24410 0.57 -0.4 4,218,221 + motA IJEDHG_24410 0.75 -1.0 4,218,222 - motA IJEDHG_24410 0.75 -1.4 4,218,222 - motA IJEDHG_24410 0.75 -1.2 4,218,235 - motA IJEDHG_24410 0.76 -0.2 4,218,236 + motA IJEDHG_24410 0.76 -0.1 4,218,236 + motA IJEDHG_24410 0.76 +0.5 4,218,236 + motA IJEDHG_24410 0.76 +0.0 4,218,237 - motA IJEDHG_24410 0.77 +1.5 4,218,336 + motA IJEDHG_24410 0.88 -0.6 4,218,401 - -0.6 4,218,425 + +0.5 4,218,436 - -1.0 4,218,455 + -0.8 4,218,638 + flhC IJEDHG_24415 0.11 +0.7 4,218,867 - flhC IJEDHG_24415 0.50 +0.9 4,218,944 + flhC IJEDHG_24415 0.64 -1.4 4,218,996 - flhC IJEDHG_24415 0.73 +0.0 4,219,024 + flhC IJEDHG_24415 0.77 +0.3 4,219,025 - flhC IJEDHG_24415 0.78 +0.9 4,219,025 - flhC IJEDHG_24415 0.78 -0.1 4,219,025 - flhC IJEDHG_24415 0.78 +0.0 4,219,098 + +0.4 4,219,099 - -1.0 4,219,208 + flhD IJEDHG_24420 0.15 +0.1 4,219,208 + flhD IJEDHG_24420 0.15 -0.2
Or see this region's nucleotide sequence