Experiment: plant=Melon; plant sample=MP1; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt arnA and arnC overlap by 1 nucleotides arnC and arnB overlap by 11 nucleotides arnB and IJEDHG_02610 are separated by 600 nucleotides IJEDHG_02610 and IJEDHG_02615 are separated by 177 nucleotides
IJEDHG_02595: arnA - bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA, at 357,209 to 359,191
arnA
IJEDHG_02600: arnC - undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase, at 359,191 to 360,171
arnC
IJEDHG_02605: arnB - UDP-4-amino-4-deoxy-L-arabinose aminotransferase, at 360,161 to 361,312
arnB
IJEDHG_02610: IJEDHG_02610 - hypothetical protein, at 361,913 to 362,050
_02610
IJEDHG_02615: IJEDHG_02615 - ABC-type xenobiotic transporter, at 362,228 to 364,351
_02615
Position (kb) 360
361
362 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 359.245 kb on - strand at 359.245 kb on - strand at 359.276 kb on + strand at 359.276 kb on + strand at 359.276 kb on + strand at 359.277 kb on - strand at 359.277 kb on - strand at 359.277 kb on - strand at 359.277 kb on - strand at 359.277 kb on - strand at 359.277 kb on - strand at 359.277 kb on - strand at 359.280 kb on + strand at 359.280 kb on + strand at 359.292 kb on - strand, within arnC at 359.292 kb on - strand, within arnC at 359.292 kb on - strand, within arnC at 359.292 kb on - strand, within arnC at 359.464 kb on - strand, within arnC at 359.469 kb on + strand, within arnC at 359.469 kb on + strand, within arnC at 359.469 kb on + strand, within arnC at 359.470 kb on - strand, within arnC at 359.470 kb on - strand, within arnC at 359.481 kb on + strand, within arnC at 359.484 kb on + strand, within arnC at 359.507 kb on + strand, within arnC at 359.507 kb on + strand, within arnC at 359.507 kb on + strand, within arnC at 359.508 kb on - strand, within arnC at 359.628 kb on + strand, within arnC at 359.628 kb on + strand, within arnC at 359.688 kb on + strand, within arnC at 359.688 kb on + strand, within arnC at 359.688 kb on + strand, within arnC at 359.689 kb on - strand, within arnC at 359.689 kb on - strand, within arnC at 359.689 kb on - strand, within arnC at 359.740 kb on + strand, within arnC at 359.761 kb on - strand, within arnC at 359.804 kb on - strand, within arnC at 359.920 kb on - strand, within arnC at 359.920 kb on - strand, within arnC at 359.939 kb on + strand, within arnC at 359.939 kb on + strand, within arnC at 359.940 kb on - strand, within arnC at 360.050 kb on + strand, within arnC at 360.065 kb on - strand, within arnC at 360.082 kb on - strand at 360.095 kb on - strand at 360.133 kb on + strand at 360.134 kb on - strand at 360.150 kb on + strand at 360.153 kb on + strand at 360.153 kb on + strand at 360.202 kb on + strand at 360.243 kb on - strand at 360.259 kb on + strand at 360.260 kb on - strand at 360.319 kb on - strand, within arnB at 360.589 kb on + strand, within arnB at 360.607 kb on - strand, within arnB at 360.610 kb on + strand, within arnB at 360.611 kb on - strand, within arnB at 360.611 kb on - strand, within arnB at 360.764 kb on - strand, within arnB at 360.823 kb on + strand, within arnB at 360.826 kb on - strand, within arnB at 360.924 kb on + strand, within arnB at 360.924 kb on + strand, within arnB at 360.925 kb on - strand, within arnB at 360.925 kb on - strand, within arnB at 360.925 kb on - strand, within arnB at 360.929 kb on + strand, within arnB at 360.930 kb on - strand, within arnB at 361.313 kb on - strand at 361.366 kb on + strand at 361.412 kb on - strand at 361.476 kb on + strand at 361.478 kb on + strand at 361.479 kb on - strand at 361.546 kb on - strand at 361.546 kb on - strand at 361.616 kb on - strand at 361.685 kb on - strand at 361.695 kb on + strand at 361.696 kb on - strand at 361.697 kb on + strand at 361.697 kb on + strand at 361.842 kb on + strand at 361.850 kb on + strand at 361.851 kb on - strand at 362.053 kb on + strand at 362.053 kb on + strand at 362.054 kb on - strand at 362.054 kb on - strand at 362.109 kb on - strand at 362.119 kb on - strand at 362.229 kb on + strand at 362.255 kb on + strand at 362.261 kb on - strand at 362.261 kb on - strand at 362.287 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=MP1; plant location=NA remove 359,245 - -0.1 359,245 - -1.3 359,276 + -1.9 359,276 + -0.3 359,276 + -1.7 359,277 - +0.3 359,277 - +0.1 359,277 - +1.3 359,277 - -0.9 359,277 - +0.3 359,277 - +0.1 359,277 - +3.6 359,280 + +0.3 359,280 + -0.4 359,292 - arnC IJEDHG_02600 0.10 +1.4 359,292 - arnC IJEDHG_02600 0.10 -0.5 359,292 - arnC IJEDHG_02600 0.10 +0.3 359,292 - arnC IJEDHG_02600 0.10 -0.1 359,464 - arnC IJEDHG_02600 0.28 -0.3 359,469 + arnC IJEDHG_02600 0.28 +0.1 359,469 + arnC IJEDHG_02600 0.28 -1.4 359,469 + arnC IJEDHG_02600 0.28 +0.6 359,470 - arnC IJEDHG_02600 0.28 +0.0 359,470 - arnC IJEDHG_02600 0.28 -0.6 359,481 + arnC IJEDHG_02600 0.30 -0.7 359,484 + arnC IJEDHG_02600 0.30 +0.8 359,507 + arnC IJEDHG_02600 0.32 +0.1 359,507 + arnC IJEDHG_02600 0.32 -2.5 359,507 + arnC IJEDHG_02600 0.32 +1.3 359,508 - arnC IJEDHG_02600 0.32 -0.2 359,628 + arnC IJEDHG_02600 0.45 -0.4 359,628 + arnC IJEDHG_02600 0.45 -1.3 359,688 + arnC IJEDHG_02600 0.51 +1.0 359,688 + arnC IJEDHG_02600 0.51 -1.0 359,688 + arnC IJEDHG_02600 0.51 -1.7 359,689 - arnC IJEDHG_02600 0.51 -0.7 359,689 - arnC IJEDHG_02600 0.51 +0.2 359,689 - arnC IJEDHG_02600 0.51 +0.2 359,740 + arnC IJEDHG_02600 0.56 +1.4 359,761 - arnC IJEDHG_02600 0.58 -0.0 359,804 - arnC IJEDHG_02600 0.62 -1.5 359,920 - arnC IJEDHG_02600 0.74 -4.0 359,920 - arnC IJEDHG_02600 0.74 -1.5 359,939 + arnC IJEDHG_02600 0.76 -0.3 359,939 + arnC IJEDHG_02600 0.76 -2.0 359,940 - arnC IJEDHG_02600 0.76 -0.1 360,050 + arnC IJEDHG_02600 0.88 +0.5 360,065 - arnC IJEDHG_02600 0.89 -2.2 360,082 - -1.1 360,095 - -0.6 360,133 + -1.0 360,134 - +0.5 360,150 + -2.2 360,153 + -0.7 360,153 + -1.5 360,202 + -0.4 360,243 - -0.3 360,259 + -2.0 360,260 - +0.2 360,319 - arnB IJEDHG_02605 0.14 +0.6 360,589 + arnB IJEDHG_02605 0.37 -1.3 360,607 - arnB IJEDHG_02605 0.39 -2.2 360,610 + arnB IJEDHG_02605 0.39 -1.4 360,611 - arnB IJEDHG_02605 0.39 +2.4 360,611 - arnB IJEDHG_02605 0.39 -2.8 360,764 - arnB IJEDHG_02605 0.52 +2.1 360,823 + arnB IJEDHG_02605 0.57 -0.6 360,826 - arnB IJEDHG_02605 0.58 -0.7 360,924 + arnB IJEDHG_02605 0.66 +0.4 360,924 + arnB IJEDHG_02605 0.66 -0.8 360,925 - arnB IJEDHG_02605 0.66 -0.2 360,925 - arnB IJEDHG_02605 0.66 -1.3 360,925 - arnB IJEDHG_02605 0.66 +0.0 360,929 + arnB IJEDHG_02605 0.67 -2.9 360,930 - arnB IJEDHG_02605 0.67 +1.7 361,313 - -0.4 361,366 + -1.3 361,412 - -1.0 361,476 + +0.4 361,478 + +0.3 361,479 - -1.0 361,546 - -0.1 361,546 - -0.3 361,616 - +0.6 361,685 - +0.3 361,695 + -2.0 361,696 - +1.2 361,697 + -1.0 361,697 + -0.2 361,842 + +3.4 361,850 + -0.6 361,851 - +1.0 362,053 + +0.5 362,053 + +0.6 362,054 - +1.7 362,054 - +1.1 362,109 - -0.2 362,119 - -0.1 362,229 + +0.0 362,255 + +0.5 362,261 - +0.3 362,261 - +0.3 362,287 + +0.5
Or see this region's nucleotide sequence