Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS14250

Experiment: Survival; Treatment=FW300; TreatmentDuration=2hrs; Outgrowth=R2A_Kan10_Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300; TreatmentDuration=2hrs; Outgrowth=R2A_Kan10_Lactate
3,022,363	+		ABCV34_RS14240	0.35	-0.9
3,022,363	+		ABCV34_RS14240	0.35	+0.0
3,022,363	+		ABCV34_RS14240	0.35	+0.0
3,022,363	+		ABCV34_RS14240	0.35	-1.3
3,022,363	+		ABCV34_RS14240	0.35	-0.3
3,022,364	-		ABCV34_RS14240	0.35	-0.9
3,022,364	-		ABCV34_RS14240	0.35	-1.9
3,022,364	-		ABCV34_RS14240	0.35	-1.0
3,022,364	-		ABCV34_RS14240	0.35	-0.5
3,022,364	-		ABCV34_RS14240	0.35	-0.7
3,022,364	-		ABCV34_RS14240	0.35	-0.2
3,022,364	-		ABCV34_RS14240	0.35	-1.2
3,022,654	+		ABCV34_RS14240	0.73	-1.6
3,022,654	+		ABCV34_RS14240	0.73	-0.5
3,022,654	+		ABCV34_RS14240	0.73	-0.1
3,022,654	+		ABCV34_RS14240	0.73	+0.0
3,022,654	+		ABCV34_RS14240	0.73	-3.1
3,022,654	+		ABCV34_RS14240	0.73	+0.1
3,022,654	+		ABCV34_RS14240	0.73	-0.5
3,022,654	+		ABCV34_RS14240	0.73	-0.6
3,022,654	+		ABCV34_RS14240	0.73	-0.5
3,022,655	-		ABCV34_RS14240	0.73	-0.0
3,022,655	-		ABCV34_RS14240	0.73	-0.9
3,022,655	-		ABCV34_RS14240	0.73	-0.6
3,022,655	-		ABCV34_RS14240	0.73	-1.1
3,022,655	-		ABCV34_RS14240	0.73	+0.3
3,022,655	-		ABCV34_RS14240	0.73	-0.0
3,022,655	-		ABCV34_RS14240	0.73	-0.7
3,022,655	-		ABCV34_RS14240	0.73	-0.8
3,022,655	-		ABCV34_RS14240	0.73	-0.2
3,022,655	-		ABCV34_RS14240	0.73	-0.6
3,022,853	+				-1.0
3,022,853	+				-1.4
3,022,853	+				+1.9
3,022,853	+				-1.2
3,022,853	+				-0.8
3,022,853	+				+1.6
3,022,853	+				-0.3
3,022,853	+				-1.0
3,022,853	+				-1.4
3,022,853	+				+0.0
3,022,853	+				-0.9
3,022,853	+				-2.0
3,022,853	+				-0.1
3,022,854	-				-1.7
3,022,854	-				-2.9
3,022,854	-				-0.7
3,022,854	-				+0.5
3,022,854	-				+0.4
3,022,854	-				-0.8
3,022,854	-				-1.8
3,022,854	-				-0.4
3,022,855	+				+0.0
3,022,855	+				-2.0
3,022,855	+				-2.3
3,022,993	+		ABCV34_RS14245	0.27	-1.0
3,022,993	+		ABCV34_RS14245	0.27	-1.2
3,022,993	+		ABCV34_RS14245	0.27	-1.9
3,022,993	+		ABCV34_RS14245	0.27	+0.3
3,022,993	+		ABCV34_RS14245	0.27	-0.2
3,022,993	+		ABCV34_RS14245	0.27	-1.5
3,022,993	+		ABCV34_RS14245	0.27	-0.8
3,022,993	+		ABCV34_RS14245	0.27	-0.6
3,022,993	+		ABCV34_RS14245	0.27	-0.6
3,022,993	+		ABCV34_RS14245	0.27	-2.0
3,022,993	+		ABCV34_RS14245	0.27	-1.7
3,022,994	-		ABCV34_RS14245	0.27	-0.7
3,022,994	-		ABCV34_RS14245	0.27	-0.4
3,022,994	-		ABCV34_RS14245	0.27	-1.9
3,022,994	-		ABCV34_RS14245	0.27	-1.1
3,023,015	+		ABCV34_RS14245	0.32	-0.7
3,023,015	+		ABCV34_RS14245	0.32	-0.9
3,023,016	-		ABCV34_RS14245	0.32	-3.0
3,023,227	+		ABCV34_RS14245	0.77	+0.1
3,023,227	+		ABCV34_RS14245	0.77	+0.3
3,023,228	-		ABCV34_RS14245	0.77	-1.1
3,023,228	-		ABCV34_RS14245	0.77	-0.5
3,023,228	-		ABCV34_RS14245	0.77	-0.1
3,023,338	+				-1.7
3,023,338	+				-0.5
3,023,338	+				-0.2
3,023,339	-				-1.5
3,023,339	-				+0.5
3,023,339	-				-1.3
3,023,339	-				-1.3
3,023,406	+				-1.6
3,023,406	+				-0.9
3,023,406	+				-1.3
3,023,406	+				-1.5
3,023,406	+				-1.1
3,023,407	-				-2.1
3,023,407	-				-1.8
3,023,407	-				-1.2
3,023,407	-				-0.4
3,023,619	+		ABCV34_RS14250	0.27	-1.3
3,023,619	+		ABCV34_RS14250	0.27	-1.6
3,023,620	-		ABCV34_RS14250	0.27	-1.8
3,023,620	-		ABCV34_RS14250	0.27	-1.6
3,023,620	-		ABCV34_RS14250	0.27	+0.7
3,023,620	-		ABCV34_RS14250	0.27	-2.8
3,023,803	+		ABCV34_RS14250	0.45	-2.9
3,023,803	+		ABCV34_RS14250	0.45	-1.6
3,023,803	+		ABCV34_RS14250	0.45	-1.1
3,023,803	+		ABCV34_RS14250	0.45	-2.7
3,023,803	+		ABCV34_RS14250	0.45	+0.1
3,023,804	-		ABCV34_RS14250	0.45	-1.3
3,023,804	-		ABCV34_RS14250	0.45	-1.3
3,023,804	-		ABCV34_RS14250	0.45	-0.4
3,023,804	-		ABCV34_RS14250	0.45	-1.3
3,023,804	-		ABCV34_RS14250	0.45	-1.6
3,023,804	-		ABCV34_RS14250	0.45	-0.4
3,023,804	-		ABCV34_RS14250	0.45	+0.3
3,023,804	-		ABCV34_RS14250	0.45	-1.3
3,023,804	-		ABCV34_RS14250	0.45	-3.1
3,023,804	-		ABCV34_RS14250	0.45	-2.2
3,024,118	-		ABCV34_RS14250	0.75	-1.3
3,024,118	-		ABCV34_RS14250	0.75	-1.7
3,024,223	+		ABCV34_RS14250	0.86	-2.2
3,024,410	+				-1.2
3,024,410	+				-3.0
3,024,494	+		ABCV34_RS14255	0.17	-1.2
3,024,494	+		ABCV34_RS14255	0.17	+0.2
3,024,494	+		ABCV34_RS14255	0.17	+0.9
3,024,494	+		ABCV34_RS14255	0.17	-1.2
3,024,494	+		ABCV34_RS14255	0.17	-2.7
3,024,495	-		ABCV34_RS14255	0.17	-1.4
3,025,036	+		ABCV34_RS14260	0.35	+0.1
3,025,036	+		ABCV34_RS14260	0.35	-0.3
3,025,036	+		ABCV34_RS14260	0.35	-0.0
3,025,036	+		ABCV34_RS14260	0.35	+1.4
3,025,036	+		ABCV34_RS14260	0.35	-0.2
3,025,036	+		ABCV34_RS14260	0.35	-1.3
3,025,036	+		ABCV34_RS14260	0.35	-1.0
3,025,036	+		ABCV34_RS14260	0.35	-0.7
3,025,037	-		ABCV34_RS14260	0.36	+0.3
3,025,037	-		ABCV34_RS14260	0.36	-0.1
3,025,037	-		ABCV34_RS14260	0.36	-0.5
3,025,037	-		ABCV34_RS14260	0.36	-3.0
3,025,037	-		ABCV34_RS14260	0.36	-1.4
3,025,037	-		ABCV34_RS14260	0.36	-1.4
3,025,037	-		ABCV34_RS14260	0.36	-0.7
3,025,037	-		ABCV34_RS14260	0.36	-1.5
3,025,109	-		ABCV34_RS14260	0.63	+0.4
3,025,109	-		ABCV34_RS14260	0.63	-1.6
3,025,109	-		ABCV34_RS14260	0.63	-1.8
3,025,169	-		ABCV34_RS14260	0.85	-0.9
3,025,189	+				-1.6
3,025,189	+				-0.5
3,025,189	+				+0.2
3,025,189	+				-2.1
3,025,189	+				-0.1
3,025,189	+				-3.7
3,025,189	+				-2.1
3,025,189	+				-1.5
3,025,189	+				-0.4
3,025,189	+				-1.2
3,025,189	+				+0.0
3,025,189	+				-2.3
3,025,189	+				-1.7
3,025,189	+				-0.1
3,025,189	+				-1.3
3,025,189	+				-1.3
3,025,189	+				-1.6
3,025,189	+				-1.1
3,025,189	+				-0.6
3,025,189	+				-1.3
3,025,189	+				+0.1
3,025,189	+				-0.1
3,025,189	+				-0.2
3,025,190	-				-1.9
3,025,190	-				-0.9
3,025,190	-				-3.5
3,025,190	-				+0.3
3,025,190	-				-1.3
3,025,190	-				-0.3
3,025,190	-				-1.6
3,025,190	-				-1.4
3,025,190	-				-0.6
3,025,190	-				-1.5
3,025,190	-				-0.9
3,025,190	-				-2.0
3,025,190	-				-1.7
3,025,190	-				-1.3
3,025,190	-				-1.4
3,025,190	-				-1.4
3,025,190	-				-2.1