Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS13000

Experiment: Survival; Treatment=FW300; TreatmentDuration=2hrs; Outgrowth=R2A_Kan10_Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300; TreatmentDuration=2hrs; Outgrowth=R2A_Kan10_Lactate
2,754,453	+				-0.8
2,754,479	-				-2.6
2,754,537	+		ABCV34_RS12995	0.14	-0.0
2,754,537	+		ABCV34_RS12995	0.14	+1.0
2,754,538	-		ABCV34_RS12995	0.14	-1.9
2,754,538	-		ABCV34_RS12995	0.14	-2.7
2,754,538	-		ABCV34_RS12995	0.14	-0.7
2,754,538	-		ABCV34_RS12995	0.14	-2.3
2,754,538	-		ABCV34_RS12995	0.14	-1.9
2,754,557	+		ABCV34_RS12995	0.16	-0.4
2,754,557	+		ABCV34_RS12995	0.16	+0.4
2,754,557	+		ABCV34_RS12995	0.16	-0.1
2,754,557	+		ABCV34_RS12995	0.16	+0.4
2,754,558	-		ABCV34_RS12995	0.16	-0.7
2,754,558	-		ABCV34_RS12995	0.16	+1.3
2,754,558	-		ABCV34_RS12995	0.16	-1.4
2,754,558	-		ABCV34_RS12995	0.16	-1.0
2,754,558	-		ABCV34_RS12995	0.16	+1.6
2,754,558	-		ABCV34_RS12995	0.16	-0.2
2,754,558	-		ABCV34_RS12995	0.16	-2.1
2,754,575	-		ABCV34_RS12995	0.17	-0.5
2,754,575	-		ABCV34_RS12995	0.17	-0.2
2,754,583	+		ABCV34_RS12995	0.18	-0.3
2,754,583	+		ABCV34_RS12995	0.18	-1.2
2,754,583	+		ABCV34_RS12995	0.18	-0.9
2,754,583	+		ABCV34_RS12995	0.18	-0.0
2,754,583	+		ABCV34_RS12995	0.18	-1.3
2,754,583	+		ABCV34_RS12995	0.18	-1.3
2,754,583	+		ABCV34_RS12995	0.18	-2.4
2,754,583	+		ABCV34_RS12995	0.18	-0.1
2,754,583	+		ABCV34_RS12995	0.18	+0.8
2,754,583	+		ABCV34_RS12995	0.18	-1.6
2,754,584	-		ABCV34_RS12995	0.18	-0.8
2,754,584	-		ABCV34_RS12995	0.18	-1.3
2,754,584	-		ABCV34_RS12995	0.18	+0.6
2,754,584	-		ABCV34_RS12995	0.18	-1.1
2,754,584	-		ABCV34_RS12995	0.18	-2.0
2,754,584	-		ABCV34_RS12995	0.18	+0.2
2,754,584	-		ABCV34_RS12995	0.18	-2.0
2,754,584	-		ABCV34_RS12995	0.18	+0.7
2,754,584	-		ABCV34_RS12995	0.18	-1.4
2,754,586	+		ABCV34_RS12995	0.18	-1.4
2,754,586	+		ABCV34_RS12995	0.18	-1.1
2,754,586	+		ABCV34_RS12995	0.18	-0.9
2,754,586	+		ABCV34_RS12995	0.18	+0.5
2,754,586	+		ABCV34_RS12995	0.18	-1.0
2,754,597	+		ABCV34_RS12995	0.20	-0.7
2,754,597	+		ABCV34_RS12995	0.20	+1.2
2,754,597	+		ABCV34_RS12995	0.20	-1.3
2,754,597	+		ABCV34_RS12995	0.20	+0.5
2,754,597	+		ABCV34_RS12995	0.20	-0.2
2,754,598	-		ABCV34_RS12995	0.20	-0.1
2,754,598	-		ABCV34_RS12995	0.20	-0.6
2,754,598	-		ABCV34_RS12995	0.20	-0.1
2,754,598	-		ABCV34_RS12995	0.20	-0.6
2,754,598	-		ABCV34_RS12995	0.20	+0.3
2,754,598	-		ABCV34_RS12995	0.20	-0.5
2,754,598	-		ABCV34_RS12995	0.20	-0.3
2,754,598	-		ABCV34_RS12995	0.20	-0.9
2,754,598	-		ABCV34_RS12995	0.20	-1.9
2,754,598	-		ABCV34_RS12995	0.20	-0.3
2,754,649	+		ABCV34_RS12995	0.25	-1.3
2,754,649	+		ABCV34_RS12995	0.25	+1.4
2,754,649	+		ABCV34_RS12995	0.25	-1.1
2,754,649	+		ABCV34_RS12995	0.25	-1.5
2,754,650	-		ABCV34_RS12995	0.25	-1.4
2,754,650	-		ABCV34_RS12995	0.25	-0.3
2,754,650	-		ABCV34_RS12995	0.25	-1.3
2,754,660	+		ABCV34_RS12995	0.26	+1.0
2,754,697	+		ABCV34_RS12995	0.29	+2.1
2,754,697	+		ABCV34_RS12995	0.29	+0.0
2,754,697	+		ABCV34_RS12995	0.29	-1.2
2,754,698	-		ABCV34_RS12995	0.30	-0.8
2,754,698	-		ABCV34_RS12995	0.30	+1.3
2,754,698	-		ABCV34_RS12995	0.30	-0.6
2,754,698	-		ABCV34_RS12995	0.30	-1.6
2,754,832	+		ABCV34_RS12995	0.43	-1.6
2,754,832	+		ABCV34_RS12995	0.43	-1.4
2,754,832	+		ABCV34_RS12995	0.43	-0.3
2,754,864	+		ABCV34_RS12995	0.46	+0.8
2,754,865	-		ABCV34_RS12995	0.46	-0.9
2,754,897	+		ABCV34_RS12995	0.49	-2.3
2,754,897	+		ABCV34_RS12995	0.49	-1.7
2,754,897	+		ABCV34_RS12995	0.49	+0.3
2,754,897	+		ABCV34_RS12995	0.49	-0.6
2,754,897	+		ABCV34_RS12995	0.49	-0.8
2,754,897	+		ABCV34_RS12995	0.49	+0.2
2,754,897	+		ABCV34_RS12995	0.49	+0.3
2,754,897	+		ABCV34_RS12995	0.49	-1.7
2,754,897	+		ABCV34_RS12995	0.49	+0.5
2,754,897	+		ABCV34_RS12995	0.49	+1.1
2,754,897	+		ABCV34_RS12995	0.49	-0.2
2,754,897	+		ABCV34_RS12995	0.49	-1.5
2,754,898	-		ABCV34_RS12995	0.49	+0.7
2,754,898	-		ABCV34_RS12995	0.49	-0.7
2,754,898	-		ABCV34_RS12995	0.49	-1.1
2,754,898	-		ABCV34_RS12995	0.49	-0.8
2,754,898	-		ABCV34_RS12995	0.49	-0.2
2,754,898	-		ABCV34_RS12995	0.49	-0.9
2,754,898	-		ABCV34_RS12995	0.49	-0.1
2,754,898	-		ABCV34_RS12995	0.49	-1.3
2,754,898	-		ABCV34_RS12995	0.49	-3.0
2,754,898	-		ABCV34_RS12995	0.49	-0.8
2,754,898	-		ABCV34_RS12995	0.49	-1.7
2,754,898	-		ABCV34_RS12995	0.49	-1.2
2,754,898	-		ABCV34_RS12995	0.49	-1.5
2,754,898	-		ABCV34_RS12995	0.49	-1.7
2,754,898	-		ABCV34_RS12995	0.49	-2.2
2,754,898	-		ABCV34_RS12995	0.49	-0.5
2,754,898	-		ABCV34_RS12995	0.49	-0.7
2,754,898	-		ABCV34_RS12995	0.49	-0.6
2,754,899	+		ABCV34_RS12995	0.50	-2.5
2,754,899	+		ABCV34_RS12995	0.50	-1.2
2,754,899	+		ABCV34_RS12995	0.50	+0.2
2,754,899	+		ABCV34_RS12995	0.50	+0.0
2,754,899	+		ABCV34_RS12995	0.50	-1.8
2,754,899	+		ABCV34_RS12995	0.50	-0.9
2,754,899	+		ABCV34_RS12995	0.50	-1.1
2,754,899	+		ABCV34_RS12995	0.50	+1.0
2,754,899	+		ABCV34_RS12995	0.50	-1.2
2,754,900	-		ABCV34_RS12995	0.50	+0.0
2,754,900	-		ABCV34_RS12995	0.50	-3.0
2,754,900	-		ABCV34_RS12995	0.50	-2.2
2,754,953	+		ABCV34_RS12995	0.55	-0.1
2,754,953	+		ABCV34_RS12995	0.55	+0.2
2,754,954	-		ABCV34_RS12995	0.55	-1.2
2,755,063	+		ABCV34_RS12995	0.66	+0.2
2,755,064	-		ABCV34_RS12995	0.66	-0.7
2,755,103	+		ABCV34_RS12995	0.70	+0.7
2,755,104	-		ABCV34_RS12995	0.70	-1.2
2,755,104	-		ABCV34_RS12995	0.70	+0.3
2,755,120	+		ABCV34_RS12995	0.71	-0.6
2,755,120	+		ABCV34_RS12995	0.71	+0.7
2,755,120	+		ABCV34_RS12995	0.71	+0.4
2,755,120	+		ABCV34_RS12995	0.71	-1.0
2,755,120	+		ABCV34_RS12995	0.71	-0.6
2,755,120	+		ABCV34_RS12995	0.71	+0.6
2,755,121	-		ABCV34_RS12995	0.72	-0.3
2,755,121	-		ABCV34_RS12995	0.72	-0.5
2,755,121	-		ABCV34_RS12995	0.72	-2.0
2,755,147	-		ABCV34_RS12995	0.74	+0.1
2,755,169	+		ABCV34_RS12995	0.76	-0.6
2,755,169	+		ABCV34_RS12995	0.76	+0.6
2,755,169	+		ABCV34_RS12995	0.76	-0.1
2,755,169	+		ABCV34_RS12995	0.76	-1.0
2,755,169	+		ABCV34_RS12995	0.76	+0.1
2,755,170	-		ABCV34_RS12995	0.76	-0.0
2,755,170	-		ABCV34_RS12995	0.76	+0.3
2,755,170	-		ABCV34_RS12995	0.76	-1.1
2,755,170	-		ABCV34_RS12995	0.76	+0.5
2,755,170	-		ABCV34_RS12995	0.76	-1.6
2,755,275	+		ABCV34_RS12995	0.87	-1.6
2,755,379	+				-2.2
2,755,380	-				-0.9
2,755,380	-				-0.8
2,755,380	-				-1.9
2,755,380	-				-1.2
2,755,398	+				-0.3
2,755,399	-				-0.4
2,755,399	-				-0.5
2,755,399	-				-1.2
2,755,399	-				-3.0
2,755,402	+				+1.6
2,755,402	+				-0.3
2,755,402	+				-0.5
2,755,402	+				+1.9
2,755,402	+				-0.6
2,755,402	+				-0.7
2,755,402	+				-0.6
2,755,402	+				-1.9
2,755,402	+				-0.1
2,755,403	-				+0.6
2,755,403	-				-1.8
2,755,403	-				-0.7
2,755,444	-				-1.8
2,755,561	+		ABCV34_RS13000	0.12	-0.1
2,755,792	+		ABCV34_RS13000	0.32	-0.7
2,756,009	+		ABCV34_RS13000	0.52	-0.1
2,756,102	-		ABCV34_RS13000	0.60	-2.1
2,756,115	+		ABCV34_RS13000	0.61	-0.7
2,756,115	+		ABCV34_RS13000	0.61	-0.1
2,756,213	-		ABCV34_RS13000	0.69	+0.3
2,756,363	+		ABCV34_RS13000	0.83	-0.7
2,756,420	-		ABCV34_RS13000	0.88	-2.5
2,756,494	+				-2.3
2,756,516	+				-1.3
2,756,516	+				-1.3
2,756,516	+				+0.3
2,756,529	+				-0.3
2,756,629	+				+0.1
2,756,629	+				-0.3
2,756,629	+				-1.0
2,756,629	+				+0.3
2,756,629	+				-0.4
2,756,629	+				-0.2
2,756,629	+				-0.9
2,756,629	+				-0.2
2,756,630	-				-2.4
2,756,630	-				-1.6
2,756,630	-				-0.3
2,756,632	+				-0.7
2,756,632	+				-0.7
2,756,632	+				-0.6
2,756,632	+				+0.3
2,756,632	+				-1.0
2,756,632	+				-1.8
2,756,632	+				-0.1
2,756,661	+		ABCV34_RS13005	0.13	-2.7
2,756,661	+		ABCV34_RS13005	0.13	-1.6
2,756,661	+		ABCV34_RS13005	0.13	-3.3
2,756,661	+		ABCV34_RS13005	0.13	-0.8
2,756,661	+		ABCV34_RS13005	0.13	-1.7
2,756,661	+		ABCV34_RS13005	0.13	-0.2
2,756,661	+		ABCV34_RS13005	0.13	-0.9
2,756,661	+		ABCV34_RS13005	0.13	-0.4
2,756,661	+		ABCV34_RS13005	0.13	+0.2
2,756,662	-		ABCV34_RS13005	0.13	-0.5
2,756,662	-		ABCV34_RS13005	0.13	-0.8
2,756,662	-		ABCV34_RS13005	0.13	-0.1
2,756,662	-		ABCV34_RS13005	0.13	-0.2
2,756,662	-		ABCV34_RS13005	0.13	-0.4
2,756,662	-		ABCV34_RS13005	0.13	+0.4
2,756,662	-		ABCV34_RS13005	0.13	-0.3
2,756,662	-		ABCV34_RS13005	0.13	-1.4
2,756,665	+		ABCV34_RS13005	0.14	-2.0
2,756,665	+		ABCV34_RS13005	0.14	-1.9
2,756,665	+		ABCV34_RS13005	0.14	-1.7
2,756,665	+		ABCV34_RS13005	0.14	-0.6
2,756,665	+		ABCV34_RS13005	0.14	-2.8
2,756,665	+		ABCV34_RS13005	0.14	-2.7
2,756,666	-		ABCV34_RS13005	0.14	-0.1
2,756,666	-		ABCV34_RS13005	0.14	-0.7
2,756,666	-		ABCV34_RS13005	0.14	-1.8
2,756,666	-		ABCV34_RS13005	0.14	-0.0
2,756,666	-		ABCV34_RS13005	0.14	-1.2
2,756,666	-		ABCV34_RS13005	0.14	-0.5
2,756,666	-		ABCV34_RS13005	0.14	+1.9
2,756,666	-		ABCV34_RS13005	0.14	-0.9
2,756,872	+		ABCV34_RS13005	0.39	-2.0
2,756,872	+		ABCV34_RS13005	0.39	-1.1
2,756,872	+		ABCV34_RS13005	0.39	-1.3
2,756,872	+		ABCV34_RS13005	0.39	-2.1
2,756,872	+		ABCV34_RS13005	0.39	-0.0
2,756,872	+		ABCV34_RS13005	0.39	-3.7
2,756,872	+		ABCV34_RS13005	0.39	-0.6
2,756,872	+		ABCV34_RS13005	0.39	-1.3
2,756,872	+		ABCV34_RS13005	0.39	-0.5
2,756,872	+		ABCV34_RS13005	0.39	+0.2
2,756,873	-		ABCV34_RS13005	0.39	-3.1
2,756,873	-		ABCV34_RS13005	0.39	-1.1
2,756,873	-		ABCV34_RS13005	0.39	-1.5
2,756,893	-		ABCV34_RS13005	0.42	-1.4
2,756,932	-		ABCV34_RS13005	0.47	-1.0
2,756,932	-		ABCV34_RS13005	0.47	-2.2
2,756,932	-		ABCV34_RS13005	0.47	-0.9
2,756,932	-		ABCV34_RS13005	0.47	-1.6
2,756,946	+		ABCV34_RS13005	0.49	-1.5
2,756,983	-		ABCV34_RS13005	0.53	-3.0
2,757,027	+		ABCV34_RS13005	0.59	-1.8
2,757,027	+		ABCV34_RS13005	0.59	-0.8
2,757,027	+		ABCV34_RS13005	0.59	-0.9
2,757,027	+		ABCV34_RS13005	0.59	-1.5
2,757,027	+		ABCV34_RS13005	0.59	-1.7
2,757,028	-		ABCV34_RS13005	0.59	-1.8
2,757,028	-		ABCV34_RS13005	0.59	-1.6
2,757,028	-		ABCV34_RS13005	0.59	-3.0
2,757,028	-		ABCV34_RS13005	0.59	-0.1
2,757,028	-		ABCV34_RS13005	0.59	-2.3
2,757,055	+		ABCV34_RS13005	0.62	-1.1
2,757,055	+		ABCV34_RS13005	0.62	-1.7
2,757,056	-		ABCV34_RS13005	0.62	-1.1
2,757,056	-		ABCV34_RS13005	0.62	-2.9
2,757,076	+		ABCV34_RS13005	0.65	-0.9
2,757,077	+		ABCV34_RS13005	0.65	-1.1
2,757,077	+		ABCV34_RS13005	0.65	-1.1
2,757,077	+		ABCV34_RS13005	0.65	-0.3
2,757,078	-		ABCV34_RS13005	0.65	-1.4
2,757,078	-		ABCV34_RS13005	0.65	-1.3
2,757,087	+		ABCV34_RS13005	0.66	-0.9
2,757,087	+		ABCV34_RS13005	0.66	-2.5
2,757,087	+		ABCV34_RS13005	0.66	-0.9
2,757,087	+		ABCV34_RS13005	0.66	-0.1
2,757,088	-		ABCV34_RS13005	0.66	-1.6
2,757,088	-		ABCV34_RS13005	0.66	+0.2
2,757,129	+		ABCV34_RS13005	0.71	-0.7
2,757,130	-		ABCV34_RS13005	0.71	-0.4
2,757,177	+		ABCV34_RS13005	0.77	-0.5
2,757,177	+		ABCV34_RS13005	0.77	-0.0
2,757,177	+		ABCV34_RS13005	0.77	-0.5
2,757,177	+		ABCV34_RS13005	0.77	-1.5
2,757,177	+		ABCV34_RS13005	0.77	+0.9
2,757,178	-		ABCV34_RS13005	0.77	+0.4
2,757,178	-		ABCV34_RS13005	0.77	-0.3
2,757,178	-		ABCV34_RS13005	0.77	-0.1
2,757,178	-		ABCV34_RS13005	0.77	-1.6
2,757,178	-		ABCV34_RS13005	0.77	-2.9
2,757,196	-		ABCV34_RS13005	0.80	-1.6
2,757,196	-		ABCV34_RS13005	0.80	-0.6
2,757,196	-		ABCV34_RS13005	0.80	-2.7
2,757,282	+				-0.9
2,757,283	-				+0.6
2,757,283	-				-0.9
2,757,283	-				-1.1
2,757,333	+				-1.0
2,757,333	+				-0.3
2,757,333	+				-1.6
2,757,333	+				+1.6
2,757,333	+				+0.1
2,757,333	+				-1.4
2,757,333	+				-1.3
2,757,333	+				-1.1
2,757,334	-				-1.4
2,757,334	-				-1.0
2,757,334	-				-1.9
2,757,334	-				-1.5
2,757,349	+				-0.6
2,757,349	+				-0.7
2,757,349	+				-2.6
2,757,350	-				-1.1
2,757,350	-				-0.0
2,757,350	-				-0.9
2,757,350	-				+0.2
2,757,350	-				-3.2
2,757,350	-				-2.4
2,757,420	+				-0.9
2,757,420	+				-1.6
2,757,509	-		ABCV34_RS13010	0.16	-2.1