Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS12980

Experiment: Survival; Treatment=FW300; TreatmentDuration=2hrs; Outgrowth=R2A_Kan10_Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300; TreatmentDuration=2hrs; Outgrowth=R2A_Kan10_Lactate
2,751,260	+		ABCV34_RS12975	0.74	-1.3
2,751,260	+		ABCV34_RS12975	0.74	-1.1
2,751,261	-		ABCV34_RS12975	0.74	-0.9
2,751,261	-		ABCV34_RS12975	0.74	-1.6
2,751,261	-		ABCV34_RS12975	0.74	-0.4
2,751,363	-		ABCV34_RS12975	0.80	-1.4
2,751,392	+		ABCV34_RS12975	0.81	-1.3
2,751,392	+		ABCV34_RS12975	0.81	+0.2
2,751,393	-		ABCV34_RS12975	0.81	+0.2
2,751,393	-		ABCV34_RS12975	0.81	-2.2
2,751,411	+		ABCV34_RS12975	0.82	-1.1
2,751,424	+		ABCV34_RS12975	0.83	-0.7
2,751,424	+		ABCV34_RS12975	0.83	-1.8
2,751,424	+		ABCV34_RS12975	0.83	-1.7
2,751,424	+		ABCV34_RS12975	0.83	-0.1
2,751,425	-		ABCV34_RS12975	0.83	-1.7
2,751,455	-		ABCV34_RS12975	0.85	-1.7
2,751,527	+		ABCV34_RS12975	0.88	-0.9
2,751,544	+		ABCV34_RS12975	0.89	-1.1
2,751,544	+		ABCV34_RS12975	0.89	-0.1
2,751,545	-		ABCV34_RS12975	0.89	-1.4
2,751,673	+				-2.2
2,751,759	-				+0.1
2,751,759	-				-0.4
2,751,763	+				-1.8
2,751,763	+				-3.0
2,751,764	-				-1.4
2,751,764	-				-1.7
2,751,764	-				-0.6
2,751,764	-				-0.4
2,751,775	+				-1.2
2,751,776	-				-0.4
2,751,776	-				-1.4
2,751,779	-				-1.6
2,751,779	-				+0.8
2,751,829	-				-0.1
2,751,838	-				-1.6
2,751,838	-				-2.3
2,751,850	+				-2.1
2,751,851	-				-1.7
2,751,893	-				-2.0
2,751,893	-				-0.1
2,752,027	-				-1.3
2,752,064	+				-3.0
2,752,065	-				-0.9
2,752,088	+				-2.0
2,752,089	-				-2.9
2,752,099	+				-0.7
2,752,120	+				-2.9
2,752,120	+				-3.0
2,752,210	-		ABCV34_RS12980	0.11	-2.8
2,752,210	-		ABCV34_RS12980	0.11	-1.3
2,752,259	+		ABCV34_RS12980	0.20	-2.1
2,752,260	-		ABCV34_RS12980	0.20	-1.0
2,752,283	-		ABCV34_RS12980	0.24	+0.0
2,752,283	-		ABCV34_RS12980	0.24	-2.1
2,752,396	+		ABCV34_RS12980	0.45	-3.7
2,752,396	+		ABCV34_RS12980	0.45	-1.8
2,752,397	-		ABCV34_RS12980	0.45	-1.7
2,752,397	-		ABCV34_RS12980	0.45	-4.2
2,752,397	-		ABCV34_RS12980	0.45	-2.8
2,752,447	-		ABCV34_RS12980	0.54	+1.9
2,752,459	+		ABCV34_RS12980	0.56	-1.0
2,752,459	+		ABCV34_RS12980	0.56	-0.7
2,752,459	+		ABCV34_RS12980	0.56	-0.7
2,752,460	-		ABCV34_RS12980	0.56	-1.5
2,752,515	+		ABCV34_RS12980	0.66	-1.1
2,752,516	-		ABCV34_RS12980	0.67	-0.7
2,752,516	-		ABCV34_RS12980	0.67	-0.4
2,752,526	+		ABCV34_RS12980	0.68	-1.4
2,752,526	+		ABCV34_RS12980	0.68	-2.3
2,752,527	-		ABCV34_RS12980	0.69	-2.1
2,752,527	-		ABCV34_RS12980	0.69	-0.9
2,752,530	+		ABCV34_RS12980	0.69	-2.3
2,752,530	+		ABCV34_RS12980	0.69	-1.2
2,752,530	+		ABCV34_RS12980	0.69	-1.4
2,752,530	+		ABCV34_RS12980	0.69	-0.7
2,752,530	+		ABCV34_RS12980	0.69	-1.7
2,752,531	-		ABCV34_RS12980	0.69	-1.1
2,752,531	-		ABCV34_RS12980	0.69	-0.9
2,752,531	-		ABCV34_RS12980	0.69	-1.8
2,752,531	-		ABCV34_RS12980	0.69	-2.1
2,752,531	-		ABCV34_RS12980	0.69	-1.9
2,752,531	-		ABCV34_RS12980	0.69	-3.7
2,752,531	-		ABCV34_RS12980	0.69	-0.1
2,752,531	-		ABCV34_RS12980	0.69	-1.1
2,752,531	-		ABCV34_RS12980	0.69	-0.7
2,752,536	+		ABCV34_RS12980	0.70	-3.0
2,752,536	+		ABCV34_RS12980	0.70	-2.3
2,752,536	+		ABCV34_RS12980	0.70	-1.3
2,752,623	-		ABCV34_RS12980	0.86	-2.1
2,752,623	-		ABCV34_RS12980	0.86	-1.7
2,752,708	-				-0.1
2,752,785	+				-1.1
2,752,785	+				-0.9
2,752,853	-		ABCV34_RS12985	0.14	-0.1
2,752,867	+		ABCV34_RS12985	0.16	-2.1
2,752,868	-		ABCV34_RS12985	0.16	-2.5
2,752,947	+		ABCV34_RS12985	0.26	-1.9
2,752,948	-		ABCV34_RS12985	0.26	-2.5
2,752,948	-		ABCV34_RS12985	0.26	-0.4
2,752,967	+		ABCV34_RS12985	0.29	-1.7
2,752,967	+		ABCV34_RS12985	0.29	-1.6
2,752,968	-		ABCV34_RS12985	0.29	-2.8
2,752,968	-		ABCV34_RS12985	0.29	-1.6
2,752,968	-		ABCV34_RS12985	0.29	-1.3
2,752,971	+		ABCV34_RS12985	0.29	-1.8
2,752,972	-		ABCV34_RS12985	0.29	-3.1
2,752,972	-		ABCV34_RS12985	0.29	-0.6
2,753,004	-		ABCV34_RS12985	0.33	-1.2
2,753,035	-		ABCV34_RS12985	0.37	-0.7
2,753,038	-		ABCV34_RS12985	0.38	-1.4
2,753,045	+		ABCV34_RS12985	0.39	-1.7
2,753,046	-		ABCV34_RS12985	0.39	-2.3
2,753,046	-		ABCV34_RS12985	0.39	+0.9
2,753,159	+		ABCV34_RS12985	0.53	-1.7
2,753,160	-		ABCV34_RS12985	0.53	-1.7
2,753,220	+		ABCV34_RS12985	0.61	-3.7
2,753,221	-		ABCV34_RS12985	0.61	-2.8
2,753,221	-		ABCV34_RS12985	0.61	-1.8
2,753,224	+		ABCV34_RS12985	0.61	-2.1
2,753,225	-		ABCV34_RS12985	0.61	-1.8
2,753,225	-		ABCV34_RS12985	0.61	-0.3
2,753,225	-		ABCV34_RS12985	0.61	-1.6
2,753,236	-		ABCV34_RS12985	0.63	-0.4
2,753,243	-		ABCV34_RS12985	0.64	-0.7
2,753,243	-		ABCV34_RS12985	0.64	-3.1
2,753,257	+		ABCV34_RS12985	0.66	-3.1
2,753,257	+		ABCV34_RS12985	0.66	-1.7
2,753,257	+		ABCV34_RS12985	0.66	-0.9
2,753,257	+		ABCV34_RS12985	0.66	-1.9
2,753,257	+		ABCV34_RS12985	0.66	-0.4
2,753,258	-		ABCV34_RS12985	0.66	-0.7
2,753,258	-		ABCV34_RS12985	0.66	-1.4
2,753,258	-		ABCV34_RS12985	0.66	-1.1
2,753,258	-		ABCV34_RS12985	0.66	-1.3
2,753,258	-		ABCV34_RS12985	0.66	-2.0
2,753,262	-		ABCV34_RS12985	0.66	-1.9
2,753,352	+		ABCV34_RS12985	0.78	-0.7
2,753,352	+		ABCV34_RS12985	0.78	-2.7
2,753,353	-		ABCV34_RS12985	0.78	-2.4
2,753,360	+		ABCV34_RS12985	0.79	-2.1
2,753,360	+		ABCV34_RS12985	0.79	-0.9
2,753,360	+		ABCV34_RS12985	0.79	-1.4
2,753,360	+		ABCV34_RS12985	0.79	-1.6
2,753,360	+		ABCV34_RS12985	0.79	-2.0
2,753,361	-		ABCV34_RS12985	0.79	-1.9
2,753,361	-		ABCV34_RS12985	0.79	-1.3
2,753,361	-		ABCV34_RS12985	0.79	-2.1
2,753,506	+				-3.5
2,753,506	+				-2.0
2,753,506	+				-1.9
2,753,507	-				+0.4
2,753,507	-				-1.0
2,753,553	+				-1.1
2,753,553	+				+1.9
2,753,553	+				-2.1
2,753,572	+				-3.1
2,753,572	+				-2.1
2,753,572	+				-1.6
2,753,572	+				-0.4
2,753,623	-		ABCV34_RS12990	0.11	-2.2
2,753,669	+		ABCV34_RS12990	0.16	-1.7
2,753,669	+		ABCV34_RS12990	0.16	-2.3
2,753,670	-		ABCV34_RS12990	0.16	-1.8
2,753,670	-		ABCV34_RS12990	0.16	-3.7
2,753,673	+		ABCV34_RS12990	0.17	-2.3
2,753,673	+		ABCV34_RS12990	0.17	-1.9
2,753,674	-		ABCV34_RS12990	0.17	-0.4
2,753,696	-		ABCV34_RS12990	0.19	-1.7