Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS12965

Experiment: Survival; Treatment=FW300; TreatmentDuration=2hrs; Outgrowth=R2A_Kan10_Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300; TreatmentDuration=2hrs; Outgrowth=R2A_Kan10_Lactate
2,747,146	+				-0.8
2,747,146	+				+0.6
2,747,146	+				-2.0
2,747,146	+				-1.5
2,747,162	+				-3.5
2,747,162	+				+0.2
2,747,175	+				+0.3
2,747,179	+				-1.3
2,747,180	-				+0.6
2,747,180	-				-1.1
2,747,238	-		ABCV34_RS12960	0.11	-1.6
2,747,238	-		ABCV34_RS12960	0.11	-0.8
2,747,294	+		ABCV34_RS12960	0.17	-1.6
2,747,307	+		ABCV34_RS12960	0.19	-1.9
2,747,308	-		ABCV34_RS12960	0.19	-2.0
2,747,308	-		ABCV34_RS12960	0.19	+0.1
2,747,345	+		ABCV34_RS12960	0.23	-2.7
2,747,345	+		ABCV34_RS12960	0.23	-1.6
2,747,345	+		ABCV34_RS12960	0.23	-1.8
2,747,346	-		ABCV34_RS12960	0.23	-0.4
2,747,346	-		ABCV34_RS12960	0.23	-1.3
2,747,519	-		ABCV34_RS12960	0.43	-2.3
2,747,527	-		ABCV34_RS12960	0.44	+0.9
2,747,729	-		ABCV34_RS12960	0.67	+0.5
2,747,729	-		ABCV34_RS12960	0.67	+0.9
2,747,757	-		ABCV34_RS12960	0.70	-2.9
2,747,757	-		ABCV34_RS12960	0.70	-1.6
2,747,761	-		ABCV34_RS12960	0.70	-1.7
2,747,850	+		ABCV34_RS12960	0.81	-0.2
2,747,850	+		ABCV34_RS12960	0.81	+0.0
2,747,851	-		ABCV34_RS12960	0.81	-0.1
2,747,859	+		ABCV34_RS12960	0.82	+2.1
2,747,880	+		ABCV34_RS12960	0.84	+1.9
2,747,881	-		ABCV34_RS12960	0.84	+0.9
2,747,881	-		ABCV34_RS12960	0.84	-1.6
2,747,881	-		ABCV34_RS12960	0.84	-0.4
2,747,955	+				-1.5
2,747,991	-				-1.6
2,747,991	-				-1.5
2,748,003	+				-0.6
2,748,003	+				-2.3
2,748,003	+				-1.6
2,748,106	+				-0.1
2,748,106	+				-0.8
2,748,106	+				-1.0
2,748,106	+				-1.4
2,748,107	-				+0.2
2,748,107	-				-0.1
2,748,107	-				-1.6
2,748,114	+				-0.3
2,748,114	+				-2.0
2,748,114	+				+0.7
2,748,114	+				-0.3
2,748,114	+				-1.6
2,748,114	+				-1.7
2,748,114	+				-0.3
2,748,114	+				-0.6
2,748,115	-				-1.4
2,748,115	-				-0.8
2,748,506	+		ABCV34_RS12965	0.52	-2.4
2,748,506	+		ABCV34_RS12965	0.52	+0.1
2,748,506	+		ABCV34_RS12965	0.52	-1.3
2,748,506	+		ABCV34_RS12965	0.52	-2.1
2,748,507	-		ABCV34_RS12965	0.52	-3.0
2,748,619	+		ABCV34_RS12965	0.68	-2.6
2,748,620	-		ABCV34_RS12965	0.68	-0.9
2,748,620	-		ABCV34_RS12965	0.68	-2.5
2,748,620	-		ABCV34_RS12965	0.68	-1.6
2,748,620	-		ABCV34_RS12965	0.68	-1.9
2,748,664	+		ABCV34_RS12965	0.74	-1.0
2,748,664	+		ABCV34_RS12965	0.74	+0.0
2,748,664	+		ABCV34_RS12965	0.74	-2.0
2,748,664	+		ABCV34_RS12965	0.74	-2.0
2,748,665	-		ABCV34_RS12965	0.74	-1.8
2,748,665	-		ABCV34_RS12965	0.74	-0.4
2,748,665	-		ABCV34_RS12965	0.74	-0.2
2,748,665	-		ABCV34_RS12965	0.74	-3.0
2,748,668	+		ABCV34_RS12965	0.75	-1.1
2,748,668	+		ABCV34_RS12965	0.75	-2.6
2,748,668	+		ABCV34_RS12965	0.75	-0.1
2,748,668	+		ABCV34_RS12965	0.75	-1.3
2,748,668	+		ABCV34_RS12965	0.75	-3.4
2,748,668	+		ABCV34_RS12965	0.75	-0.4
2,748,668	+		ABCV34_RS12965	0.75	-1.1
2,748,668	+		ABCV34_RS12965	0.75	-1.9
2,748,668	+		ABCV34_RS12965	0.75	+0.5
2,748,668	+		ABCV34_RS12965	0.75	-0.4
2,748,669	-		ABCV34_RS12965	0.75	-1.4
2,748,669	-		ABCV34_RS12965	0.75	-2.9
2,748,669	-		ABCV34_RS12965	0.75	-1.2
2,748,669	-		ABCV34_RS12965	0.75	-0.9
2,748,669	-		ABCV34_RS12965	0.75	-1.9
2,748,669	-		ABCV34_RS12965	0.75	-3.2
2,748,669	-		ABCV34_RS12965	0.75	-3.3
2,748,685	+		ABCV34_RS12965	0.77	+1.9
2,748,685	+		ABCV34_RS12965	0.77	-3.7
2,748,685	+		ABCV34_RS12965	0.77	-0.4
2,748,685	+		ABCV34_RS12965	0.77	+0.9
2,748,685	+		ABCV34_RS12965	0.77	-0.7
2,748,685	+		ABCV34_RS12965	0.77	-1.4
2,748,685	+		ABCV34_RS12965	0.77	-2.2
2,748,685	+		ABCV34_RS12965	0.77	-1.6
2,748,686	-		ABCV34_RS12965	0.77	-2.2
2,748,686	-		ABCV34_RS12965	0.77	-1.3
2,748,686	-		ABCV34_RS12965	0.77	-0.9
2,748,686	-		ABCV34_RS12965	0.77	-2.0
2,748,686	-		ABCV34_RS12965	0.77	+0.3
2,748,686	-		ABCV34_RS12965	0.77	-2.4
2,748,686	-		ABCV34_RS12965	0.77	-2.3
2,748,686	-		ABCV34_RS12965	0.77	-2.5
2,748,686	-		ABCV34_RS12965	0.77	-3.6
2,748,686	-		ABCV34_RS12965	0.77	-2.5
2,748,686	-		ABCV34_RS12965	0.77	-2.8
2,748,686	-		ABCV34_RS12965	0.77	-1.9
2,748,686	-		ABCV34_RS12965	0.77	+0.2
2,748,686	-		ABCV34_RS12965	0.77	-2.1
2,748,686	-		ABCV34_RS12965	0.77	-1.3
2,748,749	-		ABCV34_RS12965	0.86	-2.5
2,748,972	+		ABCV34_RS12970	0.11	-1.2
2,748,972	+		ABCV34_RS12970	0.11	+1.1
2,749,062	-		ABCV34_RS12970	0.20	-0.1
2,749,062	-		ABCV34_RS12970	0.20	-1.4
2,749,117	+		ABCV34_RS12970	0.25	+0.3
2,749,117	+		ABCV34_RS12970	0.25	-1.5
2,749,117	+		ABCV34_RS12970	0.25	-0.3
2,749,118	-		ABCV34_RS12970	0.26	-1.1
2,749,118	-		ABCV34_RS12970	0.26	-1.4
2,749,118	-		ABCV34_RS12970	0.26	-1.4
2,749,118	-		ABCV34_RS12970	0.26	-0.1
2,749,118	-		ABCV34_RS12970	0.26	+0.3
2,749,148	+		ABCV34_RS12970	0.29	-0.7
2,749,230	+		ABCV34_RS12970	0.37	-1.4
2,749,230	+		ABCV34_RS12970	0.37	-1.9
2,749,230	+		ABCV34_RS12970	0.37	-2.9
2,749,231	-		ABCV34_RS12970	0.37	-2.9
2,749,231	-		ABCV34_RS12970	0.37	-0.0
2,749,290	+		ABCV34_RS12970	0.43	-2.3
2,749,291	-		ABCV34_RS12970	0.43	-2.0
2,749,291	-		ABCV34_RS12970	0.43	-1.3
2,749,291	-		ABCV34_RS12970	0.43	-1.0
2,749,423	+		ABCV34_RS12970	0.57	-0.7
2,749,423	+		ABCV34_RS12970	0.57	-2.0
2,749,423	+		ABCV34_RS12970	0.57	-1.6
2,749,423	+		ABCV34_RS12970	0.57	-2.3
2,749,423	+		ABCV34_RS12970	0.57	-1.3
2,749,423	+		ABCV34_RS12970	0.57	-1.3
2,749,423	+		ABCV34_RS12970	0.57	-2.7
2,749,423	+		ABCV34_RS12970	0.57	-0.4
2,749,423	+		ABCV34_RS12970	0.57	-2.1
2,749,423	+		ABCV34_RS12970	0.57	-1.7
2,749,423	+		ABCV34_RS12970	0.57	-0.9
2,749,423	+		ABCV34_RS12970	0.57	-0.7
2,749,423	+		ABCV34_RS12970	0.57	-1.4
2,749,423	+		ABCV34_RS12970	0.57	-1.4
2,749,423	+		ABCV34_RS12970	0.57	-0.9
2,749,423	+		ABCV34_RS12970	0.57	-1.3
2,749,423	+		ABCV34_RS12970	0.57	-2.3
2,749,423	+		ABCV34_RS12970	0.57	-4.0
2,749,423	+		ABCV34_RS12970	0.57	-2.0
2,749,424	-		ABCV34_RS12970	0.57	-2.2
2,749,424	-		ABCV34_RS12970	0.57	-1.9
2,749,424	-		ABCV34_RS12970	0.57	-1.4
2,749,424	-		ABCV34_RS12970	0.57	-3.1
2,749,424	-		ABCV34_RS12970	0.57	+0.6
2,749,424	-		ABCV34_RS12970	0.57	-1.0
2,749,424	-		ABCV34_RS12970	0.57	-1.4
2,749,424	-		ABCV34_RS12970	0.57	-1.3
2,749,424	-		ABCV34_RS12970	0.57	-2.2
2,749,424	-		ABCV34_RS12970	0.57	+1.3
2,749,424	-		ABCV34_RS12970	0.57	-1.8
2,749,424	-		ABCV34_RS12970	0.57	-1.3
2,749,424	-		ABCV34_RS12970	0.57	-2.1
2,749,424	-		ABCV34_RS12970	0.57	-1.7
2,749,424	-		ABCV34_RS12970	0.57	-0.9
2,749,424	-		ABCV34_RS12970	0.57	-1.4
2,749,424	-		ABCV34_RS12970	0.57	-1.4
2,749,424	-		ABCV34_RS12970	0.57	-2.5
2,749,493	+		ABCV34_RS12970	0.64	-2.0
2,749,493	+		ABCV34_RS12970	0.64	+0.3
2,749,494	-		ABCV34_RS12970	0.64	-2.3
2,749,494	-		ABCV34_RS12970	0.64	-1.6
2,749,494	-		ABCV34_RS12970	0.64	-2.5
2,749,494	-		ABCV34_RS12970	0.64	-1.9
2,749,494	-		ABCV34_RS12970	0.64	-2.9
2,749,494	-		ABCV34_RS12970	0.64	-2.4
2,749,494	-		ABCV34_RS12970	0.64	-0.4
2,749,494	-		ABCV34_RS12970	0.64	-1.0
2,749,494	-		ABCV34_RS12970	0.64	-0.7
2,749,494	-		ABCV34_RS12970	0.64	-0.1
2,749,494	-		ABCV34_RS12970	0.64	-2.1
2,749,581	+		ABCV34_RS12970	0.73	+1.9
2,749,581	+		ABCV34_RS12970	0.73	+0.6
2,749,581	+		ABCV34_RS12970	0.73	-2.2
2,749,581	+		ABCV34_RS12970	0.73	-1.5
2,749,581	+		ABCV34_RS12970	0.73	-1.3
2,749,581	+		ABCV34_RS12970	0.73	-1.4
2,749,581	+		ABCV34_RS12970	0.73	-1.3
2,749,581	+		ABCV34_RS12970	0.73	-0.7
2,749,581	+		ABCV34_RS12970	0.73	-1.8
2,749,582	-		ABCV34_RS12970	0.73	-1.1
2,749,582	-		ABCV34_RS12970	0.73	-2.5
2,749,582	-		ABCV34_RS12970	0.73	-2.4
2,749,582	-		ABCV34_RS12970	0.73	-1.9
2,749,582	-		ABCV34_RS12970	0.73	-1.1
2,749,582	-		ABCV34_RS12970	0.73	-1.6
2,749,582	-		ABCV34_RS12970	0.73	-0.4
2,749,582	-		ABCV34_RS12970	0.73	-1.6
2,749,582	-		ABCV34_RS12970	0.73	-2.9
2,749,582	-		ABCV34_RS12970	0.73	-2.0
2,749,582	-		ABCV34_RS12970	0.73	-2.2
2,749,582	-		ABCV34_RS12970	0.73	-2.4
2,749,582	-		ABCV34_RS12970	0.73	-0.8
2,749,582	-		ABCV34_RS12970	0.73	-2.3
2,749,792	+				-1.8
2,749,792	+				-0.8
2,749,792	+				-1.4
2,749,792	+				+1.4
2,749,792	+				+0.8
2,749,792	+				-0.1
2,749,793	-				+0.6
2,749,793	-				-1.7
2,749,793	-				-1.1
2,749,793	-				-1.9
2,749,793	-				-1.8
2,749,793	-				-0.4
2,749,793	-				-0.3
2,749,793	-				-1.9
2,749,802	+				-0.7
2,749,802	+				+0.6
2,749,803	-				-2.1
2,749,803	-				+0.4
2,749,803	-				-1.6