Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS11240

Experiment: Survival; Treatment=FW300; TreatmentDuration=2hrs; Outgrowth=R2A_Kan10_Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300; TreatmentDuration=2hrs; Outgrowth=R2A_Kan10_Lactate
2,392,832	-		ABCV34_RS11230	0.82	+3.5
2,392,855	+		ABCV34_RS11230	0.83	-1.3
2,392,856	-		ABCV34_RS11230	0.84	-0.5
2,392,877	+		ABCV34_RS11230	0.85	-0.6
2,392,877	+		ABCV34_RS11230	0.85	-0.6
2,392,877	+		ABCV34_RS11230	0.85	-1.0
2,392,877	+		ABCV34_RS11230	0.85	-0.7
2,392,877	+		ABCV34_RS11230	0.85	-0.3
2,392,877	+		ABCV34_RS11230	0.85	-2.5
2,392,877	+		ABCV34_RS11230	0.85	+1.2
2,392,877	+		ABCV34_RS11230	0.85	-2.5
2,392,878	-		ABCV34_RS11230	0.85	-0.6
2,392,878	-		ABCV34_RS11230	0.85	+0.3
2,392,878	-		ABCV34_RS11230	0.85	+0.3
2,392,878	-		ABCV34_RS11230	0.85	-1.2
2,392,878	-		ABCV34_RS11230	0.85	-0.7
2,392,878	-		ABCV34_RS11230	0.85	+0.5
2,392,878	-		ABCV34_RS11230	0.85	-1.6
2,392,878	-		ABCV34_RS11230	0.85	-0.9
2,392,878	-		ABCV34_RS11230	0.85	-0.9
2,392,878	-		ABCV34_RS11230	0.85	-1.1
2,392,878	-		ABCV34_RS11230	0.85	-1.1
2,392,878	-		ABCV34_RS11230	0.85	-0.7
2,392,878	-		ABCV34_RS11230	0.85	-1.3
2,392,878	-		ABCV34_RS11230	0.85	-2.6
2,392,878	-		ABCV34_RS11230	0.85	-0.3
2,392,878	-		ABCV34_RS11230	0.85	+0.6
2,392,878	-		ABCV34_RS11230	0.85	-1.6
2,392,878	-		ABCV34_RS11230	0.85	-1.6
2,392,878	-		ABCV34_RS11230	0.85	-1.6
2,392,924	+		ABCV34_RS11230	0.89	+1.9
2,392,924	+		ABCV34_RS11230	0.89	-1.4
2,392,924	+		ABCV34_RS11230	0.89	-0.6
2,392,924	+		ABCV34_RS11230	0.89	-0.9
2,392,925	-		ABCV34_RS11230	0.89	-1.0
2,392,925	-		ABCV34_RS11230	0.89	-1.3
2,392,925	-		ABCV34_RS11230	0.89	-1.2
2,393,206	+		ABCV34_RS11235	0.12	-0.7
2,393,420	+		ABCV34_RS11235	0.48	-0.7
2,393,420	+		ABCV34_RS11235	0.48	+1.9
2,393,420	+		ABCV34_RS11235	0.48	-1.8
2,393,420	+		ABCV34_RS11235	0.48	-0.1
2,393,421	-		ABCV34_RS11235	0.48	+1.0
2,393,421	-		ABCV34_RS11235	0.48	-1.1
2,393,421	-		ABCV34_RS11235	0.48	-1.5
2,393,421	-		ABCV34_RS11235	0.48	+1.0
2,393,486	+		ABCV34_RS11235	0.59	+1.9
2,393,486	+		ABCV34_RS11235	0.59	+3.1
2,393,486	+		ABCV34_RS11235	0.59	-1.8
2,393,487	-		ABCV34_RS11235	0.59	+0.1
2,393,487	-		ABCV34_RS11235	0.59	-0.9
2,393,487	-		ABCV34_RS11235	0.59	-0.5
2,393,487	-		ABCV34_RS11235	0.59	-2.5
2,393,498	+		ABCV34_RS11235	0.61	-1.6
2,393,498	+		ABCV34_RS11235	0.61	-1.6
2,393,498	+		ABCV34_RS11235	0.61	+0.3
2,393,498	+		ABCV34_RS11235	0.61	-0.7
2,393,498	+		ABCV34_RS11235	0.61	+0.9
2,393,498	+		ABCV34_RS11235	0.61	-1.7
2,393,498	+		ABCV34_RS11235	0.61	+1.3
2,393,499	-		ABCV34_RS11235	0.61	-0.7
2,393,499	-		ABCV34_RS11235	0.61	-1.6
2,393,499	-		ABCV34_RS11235	0.61	+1.3
2,393,499	-		ABCV34_RS11235	0.61	+0.9
2,393,499	-		ABCV34_RS11235	0.61	-0.5
2,393,499	-		ABCV34_RS11235	0.61	+0.3
2,393,710	+				-0.1
2,393,710	+				-0.8
2,393,711	-				-0.7
2,393,819	+				-1.7
2,393,967	-		ABCV34_RS11240	0.26	+0.6
2,393,967	-		ABCV34_RS11240	0.26	-0.7
2,394,312	+		ABCV34_RS11240	0.74	-1.4
2,394,312	+		ABCV34_RS11240	0.74	+1.1
2,394,312	+		ABCV34_RS11240	0.74	-1.4
2,394,312	+		ABCV34_RS11240	0.74	-1.3
2,394,313	-		ABCV34_RS11240	0.74	-0.9
2,394,313	-		ABCV34_RS11240	0.74	-1.5
2,394,313	-		ABCV34_RS11240	0.74	-1.0
2,394,327	+		ABCV34_RS11240	0.76	+0.3
2,394,327	+		ABCV34_RS11240	0.76	-0.7
2,394,327	+		ABCV34_RS11240	0.76	-1.3
2,394,327	+		ABCV34_RS11240	0.76	-2.1
2,394,327	+		ABCV34_RS11240	0.76	-1.0
2,394,328	-		ABCV34_RS11240	0.76	-1.3
2,394,328	-		ABCV34_RS11240	0.76	-0.5
2,394,328	-		ABCV34_RS11240	0.76	-2.7
2,394,328	-		ABCV34_RS11240	0.76	+0.4
2,394,328	-		ABCV34_RS11240	0.76	+1.3
2,394,328	-		ABCV34_RS11240	0.76	+0.9
2,394,330	+		ABCV34_RS11240	0.76	-1.8
2,394,330	+		ABCV34_RS11240	0.76	-1.6
2,394,331	-		ABCV34_RS11240	0.77	-1.3
2,394,331	-		ABCV34_RS11240	0.77	+0.9
2,394,331	-		ABCV34_RS11240	0.77	-0.1
2,394,331	-		ABCV34_RS11240	0.77	-0.5
2,394,331	-		ABCV34_RS11240	0.77	+0.0
2,394,413	+		ABCV34_RS11240	0.88	+1.9
2,394,413	+		ABCV34_RS11240	0.88	+1.9
2,394,414	-		ABCV34_RS11240	0.88	-2.2
2,394,414	-		ABCV34_RS11240	0.88	-0.7
2,394,468	+				+1.3
2,394,468	+				-0.8
2,394,469	-				+1.9
2,394,469	-				+1.4
2,394,469	-				-2.5
2,394,469	-				-1.3
2,394,469	-				+0.1
2,394,819	+		ABCV34_RS11245	0.33	+0.1
2,394,819	+		ABCV34_RS11245	0.33	+0.6
2,394,819	+		ABCV34_RS11245	0.33	-1.7
2,394,819	+		ABCV34_RS11245	0.33	-0.4
2,394,819	+		ABCV34_RS11245	0.33	-0.9
2,394,819	+		ABCV34_RS11245	0.33	+0.9
2,394,819	+		ABCV34_RS11245	0.33	-0.9
2,394,819	+		ABCV34_RS11245	0.33	-0.1
2,394,819	+		ABCV34_RS11245	0.33	+2.4
2,394,820	-		ABCV34_RS11245	0.33	-0.5
2,394,820	-		ABCV34_RS11245	0.33	-1.3
2,394,822	+		ABCV34_RS11245	0.34	-2.2
2,394,822	+		ABCV34_RS11245	0.34	-1.4
2,394,822	+		ABCV34_RS11245	0.34	+0.3
2,394,822	+		ABCV34_RS11245	0.34	-2.9
2,394,823	-		ABCV34_RS11245	0.34	-1.6
2,394,823	-		ABCV34_RS11245	0.34	+0.3
2,394,823	-		ABCV34_RS11245	0.34	-0.1
2,394,823	-		ABCV34_RS11245	0.34	-2.1
2,394,823	-		ABCV34_RS11245	0.34	+0.9
2,394,843	+		ABCV34_RS11245	0.36	-1.3
2,394,843	+		ABCV34_RS11245	0.36	+0.5
2,394,843	+		ABCV34_RS11245	0.36	+0.9
2,394,843	+		ABCV34_RS11245	0.36	-2.3
2,394,843	+		ABCV34_RS11245	0.36	-0.2
2,394,843	+		ABCV34_RS11245	0.36	-0.1
2,394,843	+		ABCV34_RS11245	0.36	-1.6
2,394,843	+		ABCV34_RS11245	0.36	-1.5
2,394,844	-		ABCV34_RS11245	0.36	-1.0
2,394,844	-		ABCV34_RS11245	0.36	-2.1
2,394,844	-		ABCV34_RS11245	0.36	+0.9
2,394,844	-		ABCV34_RS11245	0.36	-0.5
2,394,844	-		ABCV34_RS11245	0.36	+0.9
2,394,844	-		ABCV34_RS11245	0.36	-0.9
2,394,844	-		ABCV34_RS11245	0.36	-0.5
2,394,844	-		ABCV34_RS11245	0.36	+0.9
2,394,844	-		ABCV34_RS11245	0.36	+0.5
2,394,846	-		ABCV34_RS11245	0.36	-1.4
2,395,020	+		ABCV34_RS11245	0.57	-1.9
2,395,021	-		ABCV34_RS11245	0.58	-0.1
2,395,021	-		ABCV34_RS11245	0.58	-0.7
2,395,041	+		ABCV34_RS11245	0.60	-2.0
2,395,041	+		ABCV34_RS11245	0.60	+0.3
2,395,041	+		ABCV34_RS11245	0.60	-0.2
2,395,041	+		ABCV34_RS11245	0.60	+0.3
2,395,042	-		ABCV34_RS11245	0.60	-1.7
2,395,042	-		ABCV34_RS11245	0.60	+0.9
2,395,042	-		ABCV34_RS11245	0.60	-1.3
2,395,042	-		ABCV34_RS11245	0.60	+0.3
2,395,042	-		ABCV34_RS11245	0.60	-0.8
2,395,042	-		ABCV34_RS11245	0.60	-2.5
2,395,042	-		ABCV34_RS11245	0.60	-0.9
2,395,042	-		ABCV34_RS11245	0.60	-2.1
2,395,144	+		ABCV34_RS11245	0.72	-2.0
2,395,144	+		ABCV34_RS11245	0.72	+2.9
2,395,144	+		ABCV34_RS11245	0.72	-1.7
2,395,144	+		ABCV34_RS11245	0.72	-1.6
2,395,144	+		ABCV34_RS11245	0.72	-0.4
2,395,144	+		ABCV34_RS11245	0.72	+0.9
2,395,145	-		ABCV34_RS11245	0.72	+0.3
2,395,145	-		ABCV34_RS11245	0.72	-1.9
2,395,145	-		ABCV34_RS11245	0.72	-0.9
2,395,145	-		ABCV34_RS11245	0.72	-0.1
2,395,145	-		ABCV34_RS11245	0.72	-1.1
2,395,145	-		ABCV34_RS11245	0.72	-0.8
2,395,224	+		ABCV34_RS11245	0.82	-1.6
2,395,224	+		ABCV34_RS11245	0.82	-1.8
2,395,224	+		ABCV34_RS11245	0.82	-1.6
2,395,224	+		ABCV34_RS11245	0.82	-1.3
2,395,225	-		ABCV34_RS11245	0.82	+0.9
2,395,225	-		ABCV34_RS11245	0.82	-2.2