Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS10825

Experiment: Survival; Treatment=FW300; TreatmentDuration=2hrs; Outgrowth=R2A_Kan10_Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300; TreatmentDuration=2hrs; Outgrowth=R2A_Kan10_Lactate
2,301,864	+		ABCV34_RS10815	0.88	-0.0
2,301,917	-				-2.7
2,301,917	-				-0.5
2,301,917	-				-1.1
2,302,023	+				-2.4
2,302,023	+				-1.2
2,302,023	+				-0.7
2,302,023	+				-0.8
2,302,023	+				-0.6
2,302,023	+				-0.7
2,302,024	-				-1.2
2,302,024	-				-1.1
2,302,024	-				-3.7
2,302,024	-				-0.9
2,302,024	-				-1.6
2,302,024	-				+0.3
2,302,024	-				+0.3
2,302,024	-				-1.1
2,302,024	-				+0.1
2,302,024	-				-0.6
2,302,024	-				-1.1
2,302,024	-				-1.7
2,302,024	-				-2.5
2,302,094	-				-1.3
2,302,131	-				-2.6
2,302,157	+		ABCV34_RS10820	0.13	-2.6
2,302,158	-		ABCV34_RS10820	0.13	-0.0
2,302,213	+		ABCV34_RS10820	0.28	+0.3
2,302,213	+		ABCV34_RS10820	0.28	+0.1
2,302,213	+		ABCV34_RS10820	0.28	-0.8
2,302,214	-		ABCV34_RS10820	0.28	-0.2
2,302,214	-		ABCV34_RS10820	0.28	-1.3
2,302,214	-		ABCV34_RS10820	0.28	-1.6
2,302,214	-		ABCV34_RS10820	0.28	-0.4
2,302,282	+		ABCV34_RS10820	0.47	-0.1
2,302,282	+		ABCV34_RS10820	0.47	-1.7
2,302,282	+		ABCV34_RS10820	0.47	-0.3
2,302,282	+		ABCV34_RS10820	0.47	-0.1
2,302,282	+		ABCV34_RS10820	0.47	-1.2
2,302,282	+		ABCV34_RS10820	0.47	-0.2
2,302,282	+		ABCV34_RS10820	0.47	-1.2
2,302,282	+		ABCV34_RS10820	0.47	-2.6
2,302,282	+		ABCV34_RS10820	0.47	-2.1
2,302,282	+		ABCV34_RS10820	0.47	-1.4
2,302,283	-		ABCV34_RS10820	0.47	+0.6
2,302,283	-		ABCV34_RS10820	0.47	-1.5
2,302,283	-		ABCV34_RS10820	0.47	-1.1
2,302,283	-		ABCV34_RS10820	0.47	+0.1
2,302,283	-		ABCV34_RS10820	0.47	-0.6
2,302,283	-		ABCV34_RS10820	0.47	-3.2
2,302,283	-		ABCV34_RS10820	0.47	-1.3
2,302,283	-		ABCV34_RS10820	0.47	+0.2
2,302,283	-		ABCV34_RS10820	0.47	-0.5
2,302,283	-		ABCV34_RS10820	0.47	-0.8
2,302,283	-		ABCV34_RS10820	0.47	-0.6
2,302,584	+				+1.9
2,302,584	+				+0.3
2,302,584	+				-1.3
2,302,584	+				-1.4
2,302,584	+				-1.1
2,302,584	+				+2.9
2,302,584	+				+0.3
2,302,584	+				-0.6
2,302,584	+				-1.4
2,302,584	+				+1.0
2,302,584	+				-2.7
2,302,585	-				-0.9
2,302,585	-				+1.5
2,302,585	-				-0.9
2,302,585	-				-2.4
2,302,585	-				+0.0
2,302,585	-				-0.8
2,302,585	-				-2.2
2,302,604	+				+1.1
2,302,604	+				-0.4
2,302,604	+				-1.8
2,302,604	+				-1.5
2,302,605	-				-0.8
2,302,605	-				-1.9
2,302,605	-				+0.1
2,302,605	-				-1.6
2,302,605	-				-0.6
2,302,605	-				-2.2
2,302,644	+				-0.5
2,302,644	+				-0.1
2,302,644	+				-1.0
2,302,644	+				-2.1
2,302,644	+				-0.7
2,302,644	+				-0.4
2,302,645	-				-1.6
2,302,657	-				-3.2
2,302,850	+				-2.5
2,302,851	-				+1.5
2,302,851	-				-1.8
2,302,851	-				+0.3
2,302,955	+				-3.2
2,302,955	+				-2.4
2,302,956	-				+0.3
2,302,956	-				-1.0
2,302,956	-				-0.9
2,302,956	-				-2.4
2,302,974	-		ABCV34_RS10825	0.11	-2.0
2,303,084	+		ABCV34_RS10825	0.17	-1.4
2,303,084	+		ABCV34_RS10825	0.17	+0.2
2,303,189	+		ABCV34_RS10825	0.22	-1.8
2,303,189	+		ABCV34_RS10825	0.22	-0.5
2,303,189	+		ABCV34_RS10825	0.22	-1.6
2,303,190	-		ABCV34_RS10825	0.22	+1.1
2,303,190	-		ABCV34_RS10825	0.22	-0.9
2,303,190	-		ABCV34_RS10825	0.22	-0.9
2,303,225	+		ABCV34_RS10825	0.24	-0.4
2,303,225	+		ABCV34_RS10825	0.24	-0.9
2,303,226	-		ABCV34_RS10825	0.24	-1.9
2,303,226	-		ABCV34_RS10825	0.24	-2.0
2,303,226	-		ABCV34_RS10825	0.24	-2.6
2,303,226	-		ABCV34_RS10825	0.24	-1.8
2,303,226	-		ABCV34_RS10825	0.24	-3.4
2,303,226	-		ABCV34_RS10825	0.24	-2.2
2,303,261	+		ABCV34_RS10825	0.26	-1.8
2,303,262	-		ABCV34_RS10825	0.26	+0.1
2,303,262	-		ABCV34_RS10825	0.26	-0.2
2,303,262	-		ABCV34_RS10825	0.26	-2.6
2,303,262	-		ABCV34_RS10825	0.26	+0.9
2,303,274	+		ABCV34_RS10825	0.27	-1.4
2,303,274	+		ABCV34_RS10825	0.27	-1.4
2,303,274	+		ABCV34_RS10825	0.27	+0.9
2,303,274	+		ABCV34_RS10825	0.27	-0.7
2,303,274	+		ABCV34_RS10825	0.27	-2.0
2,303,274	+		ABCV34_RS10825	0.27	-3.2
2,303,275	-		ABCV34_RS10825	0.27	-2.4
2,303,275	-		ABCV34_RS10825	0.27	-1.7
2,303,663	+		ABCV34_RS10825	0.47	+0.4
2,303,663	+		ABCV34_RS10825	0.47	-0.4
2,303,663	+		ABCV34_RS10825	0.47	-2.3
2,303,663	+		ABCV34_RS10825	0.47	-1.7
2,303,663	+		ABCV34_RS10825	0.47	+0.3
2,303,663	+		ABCV34_RS10825	0.47	-3.2
2,303,664	-		ABCV34_RS10825	0.47	+0.9
2,303,664	-		ABCV34_RS10825	0.47	-1.4
2,303,664	-		ABCV34_RS10825	0.47	-1.6
2,303,664	-		ABCV34_RS10825	0.47	-0.9
2,303,664	-		ABCV34_RS10825	0.47	+0.1
2,303,760	-		ABCV34_RS10825	0.52	-0.2
2,303,760	-		ABCV34_RS10825	0.52	+1.4
2,303,760	-		ABCV34_RS10825	0.52	-0.9
2,303,760	-		ABCV34_RS10825	0.52	-0.7
2,303,760	-		ABCV34_RS10825	0.52	-3.8
2,303,891	+		ABCV34_RS10825	0.59	-1.3
2,303,892	-		ABCV34_RS10825	0.59	+0.0
2,303,930	+		ABCV34_RS10825	0.61	-3.3
2,303,930	+		ABCV34_RS10825	0.61	+0.9
2,303,930	+		ABCV34_RS10825	0.61	-2.2
2,303,931	-		ABCV34_RS10825	0.61	-2.0
2,303,931	-		ABCV34_RS10825	0.61	-0.9
2,303,931	-		ABCV34_RS10825	0.61	-0.4
2,303,979	-		ABCV34_RS10825	0.63	+1.9
2,304,112	+		ABCV34_RS10825	0.70	-1.6
2,304,112	+		ABCV34_RS10825	0.70	-0.8
2,304,112	+		ABCV34_RS10825	0.70	-1.8
2,304,112	+		ABCV34_RS10825	0.70	-1.1
2,304,113	-		ABCV34_RS10825	0.70	-0.4
2,304,113	-		ABCV34_RS10825	0.70	+0.1
2,304,113	-		ABCV34_RS10825	0.70	+0.7
2,304,113	-		ABCV34_RS10825	0.70	-1.9
2,304,113	-		ABCV34_RS10825	0.70	-2.3
2,304,153	-		ABCV34_RS10825	0.72	-1.9
2,304,153	-		ABCV34_RS10825	0.72	-1.6
2,304,191	+		ABCV34_RS10825	0.74	+0.9
2,304,192	-		ABCV34_RS10825	0.75	+0.9
2,304,192	-		ABCV34_RS10825	0.75	-1.7
2,304,237	-		ABCV34_RS10825	0.77	+1.9
2,304,257	+		ABCV34_RS10825	0.78	-1.3
2,304,257	+		ABCV34_RS10825	0.78	-1.7
2,304,257	+		ABCV34_RS10825	0.78	-3.1
2,304,257	+		ABCV34_RS10825	0.78	-0.6
2,304,257	+		ABCV34_RS10825	0.78	-0.2
2,304,257	+		ABCV34_RS10825	0.78	-2.2
2,304,257	+		ABCV34_RS10825	0.78	-1.7
2,304,257	+		ABCV34_RS10825	0.78	+0.3
2,304,257	+		ABCV34_RS10825	0.78	-3.4
2,304,258	-		ABCV34_RS10825	0.78	-0.4
2,304,258	-		ABCV34_RS10825	0.78	-2.7
2,304,258	-		ABCV34_RS10825	0.78	+2.6
2,304,258	-		ABCV34_RS10825	0.78	+0.6
2,304,258	-		ABCV34_RS10825	0.78	+1.9
2,304,323	+		ABCV34_RS10825	0.81	-1.8
2,304,323	+		ABCV34_RS10825	0.81	-1.4
2,304,323	+		ABCV34_RS10825	0.81	-0.5
2,304,323	+		ABCV34_RS10825	0.81	-1.9
2,304,323	+		ABCV34_RS10825	0.81	-2.5
2,304,323	+		ABCV34_RS10825	0.81	-1.5
2,304,323	+		ABCV34_RS10825	0.81	-1.4
2,304,323	+		ABCV34_RS10825	0.81	-0.4
2,304,323	+		ABCV34_RS10825	0.81	-0.1
2,304,324	-		ABCV34_RS10825	0.81	-0.1
2,304,324	-		ABCV34_RS10825	0.81	-0.1
2,304,324	-		ABCV34_RS10825	0.81	-1.4
2,304,324	-		ABCV34_RS10825	0.81	-1.7
2,304,324	-		ABCV34_RS10825	0.81	-2.7
2,304,324	-		ABCV34_RS10825	0.81	+0.1
2,304,572	+				+0.4
2,304,573	-				-1.1
2,304,573	-				-1.4
2,304,573	-				-1.5
2,304,665	+				-0.7
2,304,665	+				-1.4
2,304,666	-				-3.2
2,304,666	-				-0.7
2,304,666	-				+0.9
2,304,666	-				+0.5
2,304,666	-				-1.2
2,304,711	+				-1.7
2,304,711	+				-1.3
2,304,711	+				-0.7
2,304,711	+				-0.3
2,304,711	+				+0.2
2,304,711	+				-0.6
2,304,711	+				-1.2
2,304,711	+				-0.9
2,304,711	+				-1.1
2,304,711	+				-1.4
2,304,712	-				-0.7
2,304,712	-				-1.4
2,304,712	-				-1.2
2,304,712	-				+2.9
2,304,712	-				+0.7
2,304,712	-				+0.2
2,304,712	-				+0.1
2,304,712	-				-1.9
2,304,712	-				-1.6
2,304,964	+				+0.6
2,304,964	+				-1.0
2,304,964	+				-1.2
2,304,965	-				-1.3
2,304,966	+				-0.8
2,304,966	+				+0.3
2,304,966	+				-1.3
2,304,966	+				-1.4
2,304,966	+				-1.7
2,304,967	-				-0.6
2,304,967	-				-2.0
2,304,967	-				-0.6
2,304,967	-				-1.7
2,304,967	-				-0.2
2,304,967	-				+0.4
2,304,967	-				-1.3
2,304,967	-				-1.1
2,305,017	+				-3.0
2,305,018	-				+0.2
2,305,018	-				-0.4
2,305,018	-				+1.5
2,305,018	-				-2.2
2,305,018	-				-0.4
2,305,104	+				-2.7
2,305,104	+				+0.1
2,305,104	+				-0.7
2,305,104	+				+0.1
2,305,105	-				-1.5
2,305,342	-				-0.7
2,305,342	-				-1.3
2,305,383	+				-1.5
2,305,383	+				+0.3
2,305,383	+				-1.3
2,305,383	+				+0.1
2,305,383	+				-0.4
2,305,383	+				-0.6
2,305,383	+				-0.5
2,305,383	+				+0.3
2,305,383	+				-0.9
2,305,384	-				-0.2
2,305,384	-				-1.4
2,305,384	-				-2.8
2,305,384	-				+0.6
2,305,384	-				-1.3
2,305,384	-				-0.1
2,305,395	+				-0.9
2,305,396	-				-0.7
2,305,396	-				-0.3
2,305,396	-				-0.7
2,305,441	+				-0.7
2,305,441	+				-2.3
2,305,441	+				-1.1
2,305,441	+				-1.8
2,305,441	+				+0.3
2,305,442	-				+0.7
2,305,442	-				-0.6
2,305,442	-				-1.2
2,305,442	-				-1.9
2,305,442	-				-0.4
2,305,442	-				+0.8
2,305,521	+		ABCV34_RS10830	0.21	-0.5
2,305,521	+		ABCV34_RS10830	0.21	+0.5
2,305,521	+		ABCV34_RS10830	0.21	-1.3
2,305,521	+		ABCV34_RS10830	0.21	-1.3
2,305,521	+		ABCV34_RS10830	0.21	-1.5
2,305,521	+		ABCV34_RS10830	0.21	-1.7
2,305,522	-		ABCV34_RS10830	0.21	-0.1
2,305,522	-		ABCV34_RS10830	0.21	-1.4
2,305,522	-		ABCV34_RS10830	0.21	-0.6
2,305,522	-		ABCV34_RS10830	0.21	+0.3
2,305,561	+		ABCV34_RS10830	0.27	-1.1
2,305,561	+		ABCV34_RS10830	0.27	+0.4
2,305,561	+		ABCV34_RS10830	0.27	-1.9
2,305,562	-		ABCV34_RS10830	0.28	+0.7
2,305,562	-		ABCV34_RS10830	0.28	-0.8
2,305,562	-		ABCV34_RS10830	0.28	-0.7
2,305,562	-		ABCV34_RS10830	0.28	-2.3
2,305,562	-		ABCV34_RS10830	0.28	-1.4
2,305,562	-		ABCV34_RS10830	0.28	+1.1
2,305,562	-		ABCV34_RS10830	0.28	-0.2
2,305,562	-		ABCV34_RS10830	0.28	+0.1
2,305,562	-		ABCV34_RS10830	0.28	-1.6
2,305,562	-		ABCV34_RS10830	0.28	+0.6
2,305,592	-		ABCV34_RS10830	0.32	-1.7
2,305,593	+		ABCV34_RS10830	0.32	-0.7
2,305,593	+		ABCV34_RS10830	0.32	-2.5