Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS10280

Experiment: Survival; Treatment=FW300; TreatmentDuration=2hrs; Outgrowth=R2A_Kan10_Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300; TreatmentDuration=2hrs; Outgrowth=R2A_Kan10_Lactate
2,199,647	+		ABCV34_RS10275	0.40	+1.1
2,199,647	+		ABCV34_RS10275	0.40	-1.2
2,199,648	-		ABCV34_RS10275	0.40	-0.2
2,199,648	-		ABCV34_RS10275	0.40	-0.0
2,199,767	+		ABCV34_RS10275	0.58	-2.1
2,199,767	+		ABCV34_RS10275	0.58	-0.4
2,199,767	+		ABCV34_RS10275	0.58	-1.0
2,199,767	+		ABCV34_RS10275	0.58	+0.6
2,199,767	+		ABCV34_RS10275	0.58	-1.5
2,199,767	+		ABCV34_RS10275	0.58	-2.4
2,199,767	+		ABCV34_RS10275	0.58	+0.9
2,199,767	+		ABCV34_RS10275	0.58	-0.4
2,199,767	+		ABCV34_RS10275	0.58	-1.3
2,199,768	-		ABCV34_RS10275	0.58	-2.2
2,199,768	-		ABCV34_RS10275	0.58	-1.4
2,199,950	+		ABCV34_RS10275	0.85	-0.2
2,199,950	+		ABCV34_RS10275	0.85	-0.6
2,199,951	-		ABCV34_RS10275	0.85	-0.1
2,199,991	+				-0.3
2,199,991	+				-1.0
2,199,991	+				-0.3
2,199,991	+				-0.6
2,199,991	+				-1.3
2,199,991	+				-1.4
2,199,991	+				-0.5
2,199,991	+				+2.3
2,199,991	+				-1.8
2,199,991	+				-0.6
2,199,991	+				-0.9
2,199,991	+				-0.5
2,199,991	+				-1.2
2,199,991	+				-2.9
2,199,992	-				-1.2
2,199,992	-				-0.2
2,199,992	-				-0.7
2,199,992	-				-0.3
2,199,992	-				+0.2
2,199,992	-				+1.5
2,199,992	-				-0.9
2,199,992	-				-0.3
2,199,992	-				-1.3
2,199,992	-				+1.4
2,199,992	-				-0.8
2,199,992	-				-0.4
2,199,992	-				-0.5
2,199,992	-				+1.2
2,199,992	-				-0.4
2,199,992	-				-2.4
2,199,992	-				-1.1
2,199,992	-				+0.2
2,199,993	+				-1.1
2,199,994	-				-1.0
2,200,066	+				-0.9
2,200,066	+				+0.4
2,200,067	-				-2.2
2,200,216	+				-2.6
2,200,217	-				-2.1
2,200,276	+				+0.6
2,200,276	+				+1.1
2,200,276	+				-1.5
2,200,276	+				-2.7
2,200,277	-				-2.1
2,200,277	-				-3.2
2,200,277	-				+0.3
2,200,277	-				-0.4
2,200,306	+				+0.9
2,200,306	+				-1.4
2,200,307	-				-0.9
2,200,321	-				-1.8
2,200,321	-				-0.5
2,200,336	+				-2.5
2,200,336	+				-1.5
2,200,336	+				-2.6
2,200,337	-				-1.5
2,200,337	-				-4.0
2,200,337	-				+0.5
2,200,337	-				-0.4
2,200,337	-				-2.5
2,200,337	-				+1.6
2,200,337	-				-1.1
2,200,423	+		ABCV34_RS10280	0.12	-0.5
2,200,613	-		ABCV34_RS10280	0.25	+0.3
2,200,613	-		ABCV34_RS10280	0.25	+1.3
2,200,762	+		ABCV34_RS10280	0.35	-2.2
2,200,762	+		ABCV34_RS10280	0.35	-1.7
2,200,762	+		ABCV34_RS10280	0.35	+0.4
2,200,762	+		ABCV34_RS10280	0.35	+0.5
2,200,762	+		ABCV34_RS10280	0.35	+1.9
2,200,762	+		ABCV34_RS10280	0.35	-0.4
2,200,763	-		ABCV34_RS10280	0.35	-1.0
2,200,763	-		ABCV34_RS10280	0.35	-0.5
2,200,801	+		ABCV34_RS10280	0.37	-1.7
2,200,802	-		ABCV34_RS10280	0.37	-0.7
2,200,802	-		ABCV34_RS10280	0.37	+0.7
2,200,802	-		ABCV34_RS10280	0.37	-2.1
2,200,802	-		ABCV34_RS10280	0.37	-1.3
2,200,802	-		ABCV34_RS10280	0.37	-2.7
2,200,802	-		ABCV34_RS10280	0.37	-1.5
2,200,868	-		ABCV34_RS10280	0.41	-2.3
2,200,873	+		ABCV34_RS10280	0.42	-0.1
2,200,921	+		ABCV34_RS10280	0.45	+0.3
2,200,921	+		ABCV34_RS10280	0.45	-2.5
2,200,921	+		ABCV34_RS10280	0.45	-0.7
2,200,922	-		ABCV34_RS10280	0.45	+0.9
2,200,922	-		ABCV34_RS10280	0.45	-1.8
2,200,922	-		ABCV34_RS10280	0.45	-1.9
2,200,922	-		ABCV34_RS10280	0.45	-1.2
2,200,951	+		ABCV34_RS10280	0.47	-1.5
2,200,951	+		ABCV34_RS10280	0.47	-1.9
2,200,952	-		ABCV34_RS10280	0.47	+0.7
2,200,952	-		ABCV34_RS10280	0.47	+0.3
2,200,952	-		ABCV34_RS10280	0.47	+1.9
2,200,952	-		ABCV34_RS10280	0.47	-1.0
2,200,952	-		ABCV34_RS10280	0.47	-1.9
2,200,952	-		ABCV34_RS10280	0.47	-1.3
2,200,952	-		ABCV34_RS10280	0.47	-0.9
2,200,952	-		ABCV34_RS10280	0.47	+1.9
2,200,952	-		ABCV34_RS10280	0.47	-0.1
2,201,065	+		ABCV34_RS10280	0.54	-1.7
2,201,065	+		ABCV34_RS10280	0.54	-0.0
2,201,065	+		ABCV34_RS10280	0.54	-0.2
2,201,065	+		ABCV34_RS10280	0.54	-1.8
2,201,065	+		ABCV34_RS10280	0.54	-1.2
2,201,065	+		ABCV34_RS10280	0.54	-2.7
2,201,065	+		ABCV34_RS10280	0.54	-0.9
2,201,065	+		ABCV34_RS10280	0.54	-1.7
2,201,065	+		ABCV34_RS10280	0.54	-1.9
2,201,065	+		ABCV34_RS10280	0.54	-1.5
2,201,065	+		ABCV34_RS10280	0.54	+1.9
2,201,066	-		ABCV34_RS10280	0.55	+0.7
2,201,066	-		ABCV34_RS10280	0.55	+0.6
2,201,066	-		ABCV34_RS10280	0.55	-0.3
2,201,066	-		ABCV34_RS10280	0.55	-2.8
2,201,066	-		ABCV34_RS10280	0.55	-0.8
2,201,066	-		ABCV34_RS10280	0.55	-0.1
2,201,066	-		ABCV34_RS10280	0.55	-2.3
2,201,066	-		ABCV34_RS10280	0.55	-0.9
2,201,066	-		ABCV34_RS10280	0.55	-0.7
2,201,066	-		ABCV34_RS10280	0.55	-1.4
2,201,067	+		ABCV34_RS10280	0.55	-0.5
2,201,067	+		ABCV34_RS10280	0.55	-1.9
2,201,067	+		ABCV34_RS10280	0.55	-1.0
2,201,067	+		ABCV34_RS10280	0.55	-2.5
2,201,067	+		ABCV34_RS10280	0.55	-1.2
2,201,067	+		ABCV34_RS10280	0.55	-2.4
2,201,067	+		ABCV34_RS10280	0.55	+0.9
2,201,067	+		ABCV34_RS10280	0.55	+1.6
2,201,067	+		ABCV34_RS10280	0.55	-1.4
2,201,067	+		ABCV34_RS10280	0.55	-0.5
2,201,067	+		ABCV34_RS10280	0.55	-3.5
2,201,067	+		ABCV34_RS10280	0.55	-0.4
2,201,067	+		ABCV34_RS10280	0.55	-3.6
2,201,068	-		ABCV34_RS10280	0.55	-0.9
2,201,068	-		ABCV34_RS10280	0.55	-2.4
2,201,068	-		ABCV34_RS10280	0.55	-0.2
2,201,068	-		ABCV34_RS10280	0.55	-1.6
2,201,068	-		ABCV34_RS10280	0.55	-0.3
2,201,068	-		ABCV34_RS10280	0.55	-0.1
2,201,068	-		ABCV34_RS10280	0.55	+0.9
2,201,068	-		ABCV34_RS10280	0.55	-0.1
2,201,068	-		ABCV34_RS10280	0.55	-2.1
2,201,068	-		ABCV34_RS10280	0.55	-0.7
2,201,075	-		ABCV34_RS10280	0.55	+2.9
2,201,127	-		ABCV34_RS10280	0.59	-0.8
2,201,368	+		ABCV34_RS10280	0.74	+0.8
2,201,368	+		ABCV34_RS10280	0.74	+0.9
2,201,368	+		ABCV34_RS10280	0.74	+0.9
2,201,368	+		ABCV34_RS10280	0.74	-0.9
2,201,369	-		ABCV34_RS10280	0.74	-0.1
2,201,369	-		ABCV34_RS10280	0.74	-1.4
2,201,486	+		ABCV34_RS10280	0.82	-3.0
2,201,486	+		ABCV34_RS10280	0.82	+1.2
2,201,536	+		ABCV34_RS10280	0.85	-0.6
2,201,537	-		ABCV34_RS10280	0.85	-0.2
2,201,537	-		ABCV34_RS10280	0.85	+0.3
2,201,537	-		ABCV34_RS10280	0.85	-1.4
2,201,537	-		ABCV34_RS10280	0.85	-2.6
2,201,537	-		ABCV34_RS10280	0.85	+1.1
2,201,563	+		ABCV34_RS10280	0.87	-0.7
2,201,626	+				-0.1
2,201,626	+				-0.9
2,201,626	+				+1.3
2,201,626	+				+0.9
2,201,626	+				-2.0
2,201,626	+				-1.7
2,201,626	+				+0.9
2,201,626	+				-0.8
2,201,626	+				-1.5
2,201,626	+				-1.5
2,201,627	-				-3.0
2,201,627	-				-0.9
2,201,627	-				-1.1
2,201,627	-				-1.3
2,201,627	-				-0.4
2,201,627	-				-1.4
2,201,627	-				-1.3
2,201,627	-				-1.1
2,201,630	+				-1.8
2,201,630	+				-0.3
2,201,630	+				+1.1
2,201,630	+				-2.3
2,201,630	+				+0.9
2,201,631	-				-2.3
2,201,631	-				-1.3
2,201,631	-				-0.7
2,201,631	-				-1.0
2,201,631	-				-2.7
2,201,631	-				-1.2
2,201,631	-				+1.2
2,201,631	-				-2.5
2,201,631	-				-1.1
2,201,952	+		ABCV34_RS10285	0.12	-2.3
2,201,952	+		ABCV34_RS10285	0.12	-0.2
2,201,952	+		ABCV34_RS10285	0.12	-2.0
2,201,952	+		ABCV34_RS10285	0.12	+0.7
2,201,952	+		ABCV34_RS10285	0.12	+1.7
2,201,952	+		ABCV34_RS10285	0.12	-0.3
2,201,953	-		ABCV34_RS10285	0.12	-0.7
2,201,953	-		ABCV34_RS10285	0.12	-0.3
2,201,953	-		ABCV34_RS10285	0.12	+0.1
2,201,953	-		ABCV34_RS10285	0.12	-0.6
2,201,953	-		ABCV34_RS10285	0.12	-0.9
2,201,953	-		ABCV34_RS10285	0.12	+1.5
2,201,953	-		ABCV34_RS10285	0.12	-1.4
2,201,953	-		ABCV34_RS10285	0.12	-0.5
2,202,294	+		ABCV34_RS10285	0.42	+1.6
2,202,294	+		ABCV34_RS10285	0.42	-0.0
2,202,294	+		ABCV34_RS10285	0.42	-2.3
2,202,294	+		ABCV34_RS10285	0.42	-0.4
2,202,294	+		ABCV34_RS10285	0.42	-1.3
2,202,294	+		ABCV34_RS10285	0.42	+3.1
2,202,294	+		ABCV34_RS10285	0.42	-0.7
2,202,294	+		ABCV34_RS10285	0.42	-0.8
2,202,295	-		ABCV34_RS10285	0.42	-0.9
2,202,295	-		ABCV34_RS10285	0.42	-1.9
2,202,295	-		ABCV34_RS10285	0.42	+0.5
2,202,295	-		ABCV34_RS10285	0.42	-1.7
2,202,295	-		ABCV34_RS10285	0.42	-1.4
2,202,295	-		ABCV34_RS10285	0.42	-0.9
2,202,295	-		ABCV34_RS10285	0.42	-2.0
2,202,295	-		ABCV34_RS10285	0.42	-0.3
2,202,295	-		ABCV34_RS10285	0.42	-1.8
2,202,295	-		ABCV34_RS10285	0.42	-1.0
2,202,295	-		ABCV34_RS10285	0.42	-0.1
2,202,295	-		ABCV34_RS10285	0.42	-0.7
2,202,324	+		ABCV34_RS10285	0.45	-2.6
2,202,324	+		ABCV34_RS10285	0.45	+0.8
2,202,324	+		ABCV34_RS10285	0.45	-1.5
2,202,324	+		ABCV34_RS10285	0.45	-0.9
2,202,325	-		ABCV34_RS10285	0.45	-1.1
2,202,325	-		ABCV34_RS10285	0.45	-1.5
2,202,325	-		ABCV34_RS10285	0.45	-1.1
2,202,325	-		ABCV34_RS10285	0.45	-1.7
2,202,325	-		ABCV34_RS10285	0.45	-0.1
2,202,567	+		ABCV34_RS10285	0.66	-1.5
2,202,567	+		ABCV34_RS10285	0.66	-0.3
2,202,567	+		ABCV34_RS10285	0.66	-0.4
2,202,567	+		ABCV34_RS10285	0.66	-0.5
2,202,567	+		ABCV34_RS10285	0.66	-2.0
2,202,567	+		ABCV34_RS10285	0.66	-0.8
2,202,568	-		ABCV34_RS10285	0.66	-1.5
2,202,568	-		ABCV34_RS10285	0.66	-2.8
2,202,568	-		ABCV34_RS10285	0.66	-1.3
2,202,568	-		ABCV34_RS10285	0.66	-1.3
2,202,568	-		ABCV34_RS10285	0.66	-1.8
2,202,568	-		ABCV34_RS10285	0.66	-0.7
2,202,702	+		ABCV34_RS10285	0.78	-0.1
2,202,702	+		ABCV34_RS10285	0.78	-0.6
2,202,702	+		ABCV34_RS10285	0.78	-2.8
2,202,702	+		ABCV34_RS10285	0.78	-0.3
2,202,702	+		ABCV34_RS10285	0.78	-1.7
2,202,702	+		ABCV34_RS10285	0.78	+1.9
2,202,702	+		ABCV34_RS10285	0.78	-2.3
2,202,702	+		ABCV34_RS10285	0.78	+0.1
2,202,702	+		ABCV34_RS10285	0.78	-1.0
2,202,702	+		ABCV34_RS10285	0.78	-2.6
2,202,702	+		ABCV34_RS10285	0.78	-2.3
2,202,702	+		ABCV34_RS10285	0.78	+1.0
2,202,702	+		ABCV34_RS10285	0.78	-2.0
2,202,702	+		ABCV34_RS10285	0.78	-0.5
2,202,702	+		ABCV34_RS10285	0.78	-3.1
2,202,702	+		ABCV34_RS10285	0.78	-1.3
2,202,702	+		ABCV34_RS10285	0.78	-0.4
2,202,702	+		ABCV34_RS10285	0.78	+0.1
2,202,702	+		ABCV34_RS10285	0.78	-1.6
2,202,703	-		ABCV34_RS10285	0.78	-2.3
2,202,703	-		ABCV34_RS10285	0.78	+0.9
2,202,703	-		ABCV34_RS10285	0.78	-0.6
2,202,703	-		ABCV34_RS10285	0.78	-1.0
2,202,703	-		ABCV34_RS10285	0.78	-0.7
2,202,703	-		ABCV34_RS10285	0.78	-0.8
2,202,703	-		ABCV34_RS10285	0.78	+0.3
2,202,703	-		ABCV34_RS10285	0.78	+0.0
2,202,703	-		ABCV34_RS10285	0.78	-1.8