Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS09295

Experiment: Survival; Treatment=FW300; TreatmentDuration=2hrs; Outgrowth=R2A_Kan10_Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300; TreatmentDuration=2hrs; Outgrowth=R2A_Kan10_Lactate
1,988,794	-		ABCV34_RS09285	0.89	-1.1
1,988,936	+				-1.5
1,988,937	-				-1.3
1,988,952	+				-3.3
1,988,953	-				-0.8
1,989,305	+		ABCV34_RS09290	0.49	-0.6
1,989,305	+		ABCV34_RS09290	0.49	-0.2
1,989,305	+		ABCV34_RS09290	0.49	-1.3
1,989,305	+		ABCV34_RS09290	0.49	-0.5
1,989,305	+		ABCV34_RS09290	0.49	-1.9
1,989,306	-		ABCV34_RS09290	0.49	+0.9
1,989,306	-		ABCV34_RS09290	0.49	-2.8
1,989,306	-		ABCV34_RS09290	0.49	-1.0
1,989,306	-		ABCV34_RS09290	0.49	-1.1
1,989,584	+		ABCV34_RS09290	0.82	+0.1
1,989,584	+		ABCV34_RS09290	0.82	-1.7
1,989,584	+		ABCV34_RS09290	0.82	-0.5
1,989,584	+		ABCV34_RS09290	0.82	+0.3
1,989,585	-		ABCV34_RS09290	0.82	-0.2
1,989,981	+		ABCV34_RS09295	0.61	-1.4
1,989,982	-		ABCV34_RS09295	0.61	-1.9
1,990,108	+				+0.0
1,990,108	+				+0.4
1,990,108	+				+0.2
1,990,108	+				+0.3
1,990,108	+				-1.1
1,990,108	+				-1.9
1,990,108	+				-1.6
1,990,109	-				-2.3
1,990,109	-				-0.9
1,990,109	-				-2.9
1,990,109	-				-1.8
1,990,109	-				-0.7
1,990,109	-				-0.9
1,990,109	-				-0.5
1,990,109	-				+1.2
1,990,109	-				+0.9
1,990,110	+				-1.1
1,990,110	+				-1.5
1,990,110	+				-0.3
1,990,111	-				+1.2
1,990,111	-				-1.0
1,990,111	-				-2.3
1,990,111	-				+0.1
1,990,134	+				+0.0
1,990,134	+				+1.2
1,990,134	+				-0.4
1,990,135	-				-0.1
1,990,135	-				+0.9
1,990,135	-				-1.5
1,990,135	-				-1.5
1,990,135	-				-0.7
1,990,209	+				-1.9
1,990,209	+				+1.0
1,990,209	+				+0.9
1,990,315	-		ABCV34_RS09300	0.18	-1.6
1,990,419	+		ABCV34_RS09300	0.31	+0.3
1,990,419	+		ABCV34_RS09300	0.31	+0.1
1,990,419	+		ABCV34_RS09300	0.31	-1.9
1,990,419	+		ABCV34_RS09300	0.31	-1.0
1,990,419	+		ABCV34_RS09300	0.31	+0.9
1,990,419	+		ABCV34_RS09300	0.31	-1.7
1,990,420	-		ABCV34_RS09300	0.31	-2.3
1,990,420	-		ABCV34_RS09300	0.31	-0.4
1,990,420	-		ABCV34_RS09300	0.31	-1.8
1,990,420	-		ABCV34_RS09300	0.31	-0.4
1,990,420	-		ABCV34_RS09300	0.31	+0.0
1,990,494	+		ABCV34_RS09300	0.39	-1.0
1,990,494	+		ABCV34_RS09300	0.39	-0.8
1,990,494	+		ABCV34_RS09300	0.39	-0.8
1,990,494	+		ABCV34_RS09300	0.39	-1.2
1,990,495	-		ABCV34_RS09300	0.39	-0.3
1,990,495	-		ABCV34_RS09300	0.39	-0.7
1,990,611	+		ABCV34_RS09300	0.53	-0.1
1,990,611	+		ABCV34_RS09300	0.53	-0.2
1,990,611	+		ABCV34_RS09300	0.53	+0.8
1,990,611	+		ABCV34_RS09300	0.53	-1.3
1,990,612	-		ABCV34_RS09300	0.53	+0.3
1,990,612	-		ABCV34_RS09300	0.53	-1.6
1,990,612	-		ABCV34_RS09300	0.53	+0.5
1,990,612	-		ABCV34_RS09300	0.53	-0.9
1,990,612	-		ABCV34_RS09300	0.53	-1.5
1,990,612	-		ABCV34_RS09300	0.53	+1.0
1,990,612	-		ABCV34_RS09300	0.53	-1.7
1,990,635	+		ABCV34_RS09300	0.56	-1.3
1,990,636	-		ABCV34_RS09300	0.56	-0.7
1,990,654	+		ABCV34_RS09300	0.58	-2.0
1,990,654	+		ABCV34_RS09300	0.58	+0.8
1,990,654	+		ABCV34_RS09300	0.58	-1.9
1,990,655	-		ABCV34_RS09300	0.58	-0.4
1,990,655	-		ABCV34_RS09300	0.58	-0.4
1,990,655	-		ABCV34_RS09300	0.58	-0.2
1,990,655	-		ABCV34_RS09300	0.58	-0.3
1,990,655	-		ABCV34_RS09300	0.58	-1.0
1,990,655	-		ABCV34_RS09300	0.58	-0.1
1,990,655	-		ABCV34_RS09300	0.58	-1.3
1,990,734	+		ABCV34_RS09300	0.68	+1.9
1,990,734	+		ABCV34_RS09300	0.68	-1.1
1,990,735	-		ABCV34_RS09300	0.68	+1.9
1,990,740	+		ABCV34_RS09300	0.68	+0.2
1,990,741	-		ABCV34_RS09300	0.68	-0.4
1,990,741	-		ABCV34_RS09300	0.68	-0.8
1,990,741	-		ABCV34_RS09300	0.68	-1.4
1,990,741	-		ABCV34_RS09300	0.68	-0.9
1,990,782	+		ABCV34_RS09300	0.73	+0.6
1,990,782	+		ABCV34_RS09300	0.73	+0.4
1,990,782	+		ABCV34_RS09300	0.73	-0.9
1,990,782	+		ABCV34_RS09300	0.73	-1.5
1,990,782	+		ABCV34_RS09300	0.73	+0.6
1,990,782	+		ABCV34_RS09300	0.73	-0.9
1,990,782	+		ABCV34_RS09300	0.73	-1.7
1,990,782	+		ABCV34_RS09300	0.73	-0.1
1,990,782	+		ABCV34_RS09300	0.73	-0.2
1,990,782	+		ABCV34_RS09300	0.73	-0.7
1,990,782	+		ABCV34_RS09300	0.73	-2.4
1,990,782	+		ABCV34_RS09300	0.73	-1.5
1,990,782	+		ABCV34_RS09300	0.73	-1.1
1,990,783	-		ABCV34_RS09300	0.73	+0.3
1,990,783	-		ABCV34_RS09300	0.73	-1.4
1,990,783	-		ABCV34_RS09300	0.73	-1.0
1,990,783	-		ABCV34_RS09300	0.73	-0.7
1,990,783	-		ABCV34_RS09300	0.73	-0.9
1,990,783	-		ABCV34_RS09300	0.73	-3.2
1,990,783	-		ABCV34_RS09300	0.73	-1.0
1,990,783	-		ABCV34_RS09300	0.73	-2.2
1,990,959	+				+0.4
1,990,959	+				-1.0
1,990,959	+				-1.5
1,990,959	+				-1.0
1,990,959	+				-1.4
1,990,959	+				+0.4
1,990,959	+				-2.0
1,990,959	+				+1.4
1,990,959	+				-2.0
1,990,959	+				-0.7
1,990,959	+				-1.6
1,990,959	+				-1.1
1,990,959	+				-0.5
1,990,959	+				-0.9
1,990,959	+				-0.4
1,990,959	+				-0.3
1,990,959	+				-0.7
1,990,959	+				+2.2
1,990,960	-				-1.5
1,990,960	-				-0.4
1,990,960	-				-0.5
1,990,960	-				+0.2
1,990,960	-				-0.8
1,990,960	-				-1.4
1,990,960	-				+0.8
1,990,960	-				-1.4
1,990,960	-				-0.4
1,990,960	-				-1.0
1,990,960	-				-0.4
1,990,960	-				-0.6
1,990,960	-				-0.7
1,990,960	-				-0.9
1,990,960	-				-1.0
1,990,960	-				-0.7
1,990,960	-				-1.3
1,990,960	-				-1.7
1,990,960	-				-0.7
1,990,960	-				-1.6
1,990,960	-				-0.4
1,991,002	+				-0.6
1,991,024	-				-0.3