Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS06880

Experiment: Survival; Treatment=FW300; TreatmentDuration=2hrs; Outgrowth=R2A_Kan10_Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300; TreatmentDuration=2hrs; Outgrowth=R2A_Kan10_Lactate
1,480,896	-		ABCV34_RS06870	0.51	-1.4
1,480,901	+		ABCV34_RS06870	0.51	-0.5
1,480,901	+		ABCV34_RS06870	0.51	+0.4
1,480,901	+		ABCV34_RS06870	0.51	-1.9
1,480,901	+		ABCV34_RS06870	0.51	-2.4
1,480,901	+		ABCV34_RS06870	0.51	+1.1
1,480,902	-		ABCV34_RS06870	0.52	-0.4
1,480,902	-		ABCV34_RS06870	0.52	-0.7
1,480,902	-		ABCV34_RS06870	0.52	-0.8
1,480,934	+		ABCV34_RS06870	0.54	+0.3
1,480,934	+		ABCV34_RS06870	0.54	-2.4
1,480,934	+		ABCV34_RS06870	0.54	-2.2
1,480,935	-		ABCV34_RS06870	0.54	-0.7
1,480,935	-		ABCV34_RS06870	0.54	+1.2
1,480,935	-		ABCV34_RS06870	0.54	-0.3
1,480,935	-		ABCV34_RS06870	0.54	-0.1
1,480,935	-		ABCV34_RS06870	0.54	-2.1
1,480,935	-		ABCV34_RS06870	0.54	-2.4
1,480,935	-		ABCV34_RS06870	0.54	-0.6
1,480,937	+		ABCV34_RS06870	0.54	-2.1
1,480,937	+		ABCV34_RS06870	0.54	-2.5
1,480,937	+		ABCV34_RS06870	0.54	-0.1
1,480,937	+		ABCV34_RS06870	0.54	-1.4
1,480,937	+		ABCV34_RS06870	0.54	-0.6
1,480,937	+		ABCV34_RS06870	0.54	-2.2
1,480,937	+		ABCV34_RS06870	0.54	-1.2
1,480,938	-		ABCV34_RS06870	0.54	-0.0
1,480,938	-		ABCV34_RS06870	0.54	+0.6
1,480,938	-		ABCV34_RS06870	0.54	-1.5
1,480,938	-		ABCV34_RS06870	0.54	-1.3
1,480,938	-		ABCV34_RS06870	0.54	-1.1
1,480,938	-		ABCV34_RS06870	0.54	-2.9
1,480,938	-		ABCV34_RS06870	0.54	-1.6
1,480,938	-		ABCV34_RS06870	0.54	+0.8
1,480,938	-		ABCV34_RS06870	0.54	-1.8
1,480,938	-		ABCV34_RS06870	0.54	-0.7
1,480,938	-		ABCV34_RS06870	0.54	-0.6
1,480,984	-		ABCV34_RS06870	0.57	+0.1
1,480,992	-		ABCV34_RS06870	0.58	+2.0
1,481,027	+		ABCV34_RS06870	0.60	-0.0
1,481,027	+		ABCV34_RS06870	0.60	-0.8
1,481,028	-		ABCV34_RS06870	0.60	+1.0
1,481,036	+		ABCV34_RS06870	0.61	+0.0
1,481,037	-		ABCV34_RS06870	0.61	+0.3
1,481,105	+		ABCV34_RS06870	0.65	-2.5
1,481,105	+		ABCV34_RS06870	0.65	-2.1
1,481,105	+		ABCV34_RS06870	0.65	-0.2
1,481,105	+		ABCV34_RS06870	0.65	-1.7
1,481,105	+		ABCV34_RS06870	0.65	-0.5
1,481,105	+		ABCV34_RS06870	0.65	-0.8
1,481,105	+		ABCV34_RS06870	0.65	-2.5
1,481,106	-		ABCV34_RS06870	0.65	+0.1
1,481,106	-		ABCV34_RS06870	0.65	-1.2
1,481,106	-		ABCV34_RS06870	0.65	-1.6
1,481,106	-		ABCV34_RS06870	0.65	-1.5
1,481,106	-		ABCV34_RS06870	0.65	-0.2
1,481,106	-		ABCV34_RS06870	0.65	-1.8
1,481,106	-		ABCV34_RS06870	0.65	-1.4
1,481,106	-		ABCV34_RS06870	0.65	-0.9
1,481,132	+		ABCV34_RS06870	0.67	-1.0
1,481,132	+		ABCV34_RS06870	0.67	-1.9
1,481,132	+		ABCV34_RS06870	0.67	-1.4
1,481,132	+		ABCV34_RS06870	0.67	-2.7
1,481,133	-		ABCV34_RS06870	0.67	-0.9
1,481,133	-		ABCV34_RS06870	0.67	-0.6
1,481,133	-		ABCV34_RS06870	0.67	-3.3
1,481,133	-		ABCV34_RS06870	0.67	-1.8
1,481,133	-		ABCV34_RS06870	0.67	-1.3
1,481,133	-		ABCV34_RS06870	0.67	-2.4
1,481,133	-		ABCV34_RS06870	0.67	-1.9
1,481,133	-		ABCV34_RS06870	0.67	-2.6
1,481,183	+		ABCV34_RS06870	0.71	-1.1
1,481,183	+		ABCV34_RS06870	0.71	-1.8
1,481,183	+		ABCV34_RS06870	0.71	-1.2
1,481,183	+		ABCV34_RS06870	0.71	-0.9
1,481,184	-		ABCV34_RS06870	0.71	-1.8
1,481,237	+		ABCV34_RS06870	0.74	-1.5
1,481,237	+		ABCV34_RS06870	0.74	-1.9
1,481,237	+		ABCV34_RS06870	0.74	-0.9
1,481,238	-		ABCV34_RS06870	0.74	-3.4
1,481,238	-		ABCV34_RS06870	0.74	-3.1
1,481,255	+		ABCV34_RS06870	0.75	-0.8
1,481,255	+		ABCV34_RS06870	0.75	-0.7
1,481,255	+		ABCV34_RS06870	0.75	-1.6
1,481,256	-		ABCV34_RS06870	0.75	-1.6
1,481,256	-		ABCV34_RS06870	0.75	-0.5
1,481,369	+		ABCV34_RS06870	0.83	-1.6
1,481,369	+		ABCV34_RS06870	0.83	-0.7
1,481,369	+		ABCV34_RS06870	0.83	-1.6
1,481,369	+		ABCV34_RS06870	0.83	-0.7
1,481,369	+		ABCV34_RS06870	0.83	-0.0
1,481,370	-		ABCV34_RS06870	0.83	-1.4
1,481,370	-		ABCV34_RS06870	0.83	+0.4
1,481,370	-		ABCV34_RS06870	0.83	-2.0
1,481,370	-		ABCV34_RS06870	0.83	-1.7
1,481,372	+		ABCV34_RS06870	0.83	-1.6
1,481,372	+		ABCV34_RS06870	0.83	-0.5
1,481,372	+		ABCV34_RS06870	0.83	-1.0
1,481,372	+		ABCV34_RS06870	0.83	-1.1
1,481,372	+		ABCV34_RS06870	0.83	-1.2
1,481,373	-		ABCV34_RS06870	0.83	-0.8
1,481,373	-		ABCV34_RS06870	0.83	-1.2
1,481,448	-		ABCV34_RS06870	0.88	-1.1
1,481,464	-		ABCV34_RS06870	0.89	-0.5
1,481,573	+				-1.0
1,481,573	+				-1.8
1,481,573	+				-0.0
1,481,573	+				-3.1
1,481,573	+				-2.6
1,481,574	-				+0.1
1,481,574	-				-1.3
1,481,620	-				-1.2
1,481,643	+				-0.9
1,481,643	+				-0.9
1,481,643	+				-1.2
1,481,643	+				-0.1
1,481,643	+				-1.9
1,481,644	-				-1.1
1,481,644	-				-1.2
1,481,670	+				+0.6
1,481,670	+				+0.6
1,481,671	-				-2.0
1,481,678	+				-1.4
1,481,679	-				-0.2
1,481,679	-				-1.4
1,481,679	-				-1.2
1,481,679	-				-1.6
1,481,679	-				-1.3
1,481,679	-				-1.5
1,481,679	-				-2.1
1,481,703	+				-0.1
1,481,703	+				-2.9
1,481,703	+				-2.5
1,481,703	+				-1.6
1,481,703	+				-0.2
1,481,703	+				+1.0
1,481,704	-				-1.4
1,481,704	-				-1.9
1,482,054	+		ABCV34_RS06880	0.19	-1.7
1,482,055	-		ABCV34_RS06880	0.19	-1.9
1,482,055	-		ABCV34_RS06880	0.19	-0.4
1,482,055	-		ABCV34_RS06880	0.19	+0.4
1,482,055	-		ABCV34_RS06880	0.19	-0.6
1,482,255	+		ABCV34_RS06880	0.40	-1.4
1,482,441	+		ABCV34_RS06880	0.59	-1.8
1,482,441	+		ABCV34_RS06880	0.59	+0.2
1,482,441	+		ABCV34_RS06880	0.59	-1.0
1,482,441	+		ABCV34_RS06880	0.59	-3.0
1,482,442	-		ABCV34_RS06880	0.60	-1.7
1,482,442	-		ABCV34_RS06880	0.60	-1.4
1,482,442	-		ABCV34_RS06880	0.60	-0.8
1,482,442	-		ABCV34_RS06880	0.60	-2.0
1,482,582	+		ABCV34_RS06880	0.74	-2.4
1,482,582	+		ABCV34_RS06880	0.74	-1.6
1,482,582	+		ABCV34_RS06880	0.74	-0.6
1,482,583	-		ABCV34_RS06880	0.74	-0.8
1,482,583	-		ABCV34_RS06880	0.74	-0.8
1,482,832	+				-0.4
1,482,832	+				-0.0
1,482,832	+				+0.2
1,482,832	+				-1.0
1,482,832	+				-2.0
1,482,832	+				-1.7
1,482,833	-				-1.9
1,482,833	-				-1.3
1,482,833	-				-1.6
1,482,833	-				-0.8
1,482,834	+				+0.3
1,482,834	+				-1.5
1,482,905	+				-0.8
1,482,905	+				+2.2
1,482,906	-				-0.1
1,482,906	-				-0.3
1,483,054	+				-0.1
1,483,054	+				-1.4
1,483,054	+				-0.8
1,483,054	+				-0.9
1,483,055	-				-0.4
1,483,055	-				-0.3
1,483,057	-				-1.8
1,483,098	+				-2.0
1,483,098	+				-0.1
1,483,098	+				+0.0
1,483,098	+				-0.1
1,483,098	+				-1.2
1,483,098	+				-2.0
1,483,098	+				-2.0
1,483,098	+				-1.6
1,483,099	-				+0.4
1,483,099	-				-0.8
1,483,099	-				-1.9
1,483,099	-				+1.0
1,483,099	-				+0.2
1,483,123	+				-1.3
1,483,123	+				-1.3
1,483,123	+				-1.9
1,483,123	+				-1.7
1,483,123	+				-0.1
1,483,124	-				+0.5
1,483,124	-				-1.1
1,483,203	+		ABCV34_RS06885	0.13	-0.5
1,483,203	+		ABCV34_RS06885	0.13	-0.1
1,483,204	-		ABCV34_RS06885	0.13	+2.0
1,483,204	-		ABCV34_RS06885	0.13	+0.1
1,483,204	-		ABCV34_RS06885	0.13	-0.4
1,483,204	-		ABCV34_RS06885	0.13	+0.3
1,483,204	-		ABCV34_RS06885	0.13	-0.1
1,483,204	-		ABCV34_RS06885	0.13	-1.7
1,483,204	-		ABCV34_RS06885	0.13	-0.6
1,483,204	-		ABCV34_RS06885	0.13	-1.0
1,483,274	-		ABCV34_RS06885	0.22	-0.7
1,483,369	-		ABCV34_RS06885	0.33	+0.1
1,483,585	+		ABCV34_RS06885	0.60	-0.7
1,483,619	-		ABCV34_RS06885	0.64	-1.2
1,483,684	-		ABCV34_RS06885	0.72	+0.4