Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS05695

Experiment: Survival; Treatment=FW300; TreatmentDuration=2hrs; Outgrowth=R2A_Kan10_Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABCV34_RS05680 and ABCV34_RS05685 overlap by 4 nucleotidesABCV34_RS05685 and ABCV34_RS05690 are separated by 6 nucleotidesABCV34_RS05690 and ABCV34_RS05695 are separated by 113 nucleotidesABCV34_RS05695 and ABCV34_RS05700 are separated by 10 nucleotidesABCV34_RS05700 and ABCV34_RS05705 are separated by 80 nucleotides ABCV34_RS05680: ABCV34_RS05680 - flagellar motor switch protein FliM, at 1,236,266 to 1,237,282 _RS05680 ABCV34_RS05685: ABCV34_RS05685 - flagellar motor switch protein FliN, at 1,237,279 to 1,237,815 _RS05685 ABCV34_RS05690: ABCV34_RS05690 - flagellar biosynthetic protein FliO, at 1,237,822 to 1,238,145 _RS05690 ABCV34_RS05695: ABCV34_RS05695 - flagellar type III secretion system pore protein FliP, at 1,238,259 to 1,238,945 _RS05695 ABCV34_RS05700: ABCV34_RS05700 - flagellar biosynthesis protein FliQ, at 1,238,956 to 1,239,225 _RS05700 ABCV34_RS05705: ABCV34_RS05705 - flagellar biosynthetic protein FliR, at 1,239,306 to 1,240,091 _RS05705 Position (kb) 1238 1239Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1237.511 kb on + strand, within ABCV34_RS05685at 1237.511 kb on + strand, within ABCV34_RS05685at 1237.511 kb on + strand, within ABCV34_RS05685at 1237.511 kb on + strand, within ABCV34_RS05685at 1237.511 kb on + strand, within ABCV34_RS05685at 1237.511 kb on + strand, within ABCV34_RS05685at 1237.511 kb on + strand, within ABCV34_RS05685at 1237.512 kb on - strand, within ABCV34_RS05685at 1237.512 kb on - strand, within ABCV34_RS05685at 1237.747 kb on + strand, within ABCV34_RS05685at 1237.747 kb on + strand, within ABCV34_RS05685at 1237.748 kb on - strand, within ABCV34_RS05685at 1237.748 kb on - strand, within ABCV34_RS05685at 1237.748 kb on - strand, within ABCV34_RS05685at 1237.748 kb on - strand, within ABCV34_RS05685at 1237.950 kb on + strand, within ABCV34_RS05690at 1237.950 kb on + strand, within ABCV34_RS05690at 1237.950 kb on + strand, within ABCV34_RS05690at 1237.950 kb on + strand, within ABCV34_RS05690at 1237.951 kb on - strand, within ABCV34_RS05690at 1238.004 kb on - strand, within ABCV34_RS05690at 1238.532 kb on + strand, within ABCV34_RS05695at 1238.532 kb on + strand, within ABCV34_RS05695at 1238.532 kb on + strand, within ABCV34_RS05695at 1238.532 kb on + strand, within ABCV34_RS05695at 1238.532 kb on + strand, within ABCV34_RS05695at 1238.533 kb on - strand, within ABCV34_RS05695at 1238.533 kb on - strand, within ABCV34_RS05695at 1238.533 kb on - strand, within ABCV34_RS05695at 1238.533 kb on - strand, within ABCV34_RS05695at 1238.544 kb on + strand, within ABCV34_RS05695at 1238.544 kb on + strand, within ABCV34_RS05695at 1238.545 kb on - strand, within ABCV34_RS05695at 1238.545 kb on - strand, within ABCV34_RS05695at 1238.570 kb on + strand, within ABCV34_RS05695at 1238.570 kb on + strand, within ABCV34_RS05695at 1238.570 kb on + strand, within ABCV34_RS05695at 1238.570 kb on + strand, within ABCV34_RS05695at 1238.570 kb on + strand, within ABCV34_RS05695at 1238.570 kb on + strand, within ABCV34_RS05695at 1238.571 kb on - strand, within ABCV34_RS05695at 1238.571 kb on - strand, within ABCV34_RS05695at 1238.663 kb on + strand, within ABCV34_RS05695at 1238.727 kb on + strand, within ABCV34_RS05695at 1238.727 kb on + strand, within ABCV34_RS05695at 1238.727 kb on + strand, within ABCV34_RS05695at 1238.727 kb on + strand, within ABCV34_RS05695at 1238.728 kb on - strand, within ABCV34_RS05695at 1238.728 kb on - strand, within ABCV34_RS05695at 1238.728 kb on - strand, within ABCV34_RS05695at 1238.728 kb on - strand, within ABCV34_RS05695at 1238.728 kb on - strand, within ABCV34_RS05695at 1238.728 kb on - strand, within ABCV34_RS05695at 1238.728 kb on - strand, within ABCV34_RS05695at 1238.937 kb on + strandat 1238.937 kb on + strandat 1238.938 kb on - strandat 1238.938 kb on - strandat 1238.938 kb on - strandat 1238.938 kb on - strandat 1238.938 kb on - strandat 1238.938 kb on - strandat 1238.986 kb on + strand, within ABCV34_RS05700at 1238.986 kb on + strand, within ABCV34_RS05700at 1238.986 kb on + strand, within ABCV34_RS05700at 1238.986 kb on + strand, within ABCV34_RS05700at 1238.987 kb on - strand, within ABCV34_RS05700at 1238.987 kb on - strand, within ABCV34_RS05700at 1238.987 kb on - strand, within ABCV34_RS05700at 1238.987 kb on - strand, within ABCV34_RS05700at 1238.987 kb on - strand, within ABCV34_RS05700at 1238.987 kb on - strand, within ABCV34_RS05700at 1239.181 kb on + strand, within ABCV34_RS05700at 1239.181 kb on + strand, within ABCV34_RS05700at 1239.181 kb on + strand, within ABCV34_RS05700at 1239.181 kb on + strand, within ABCV34_RS05700at 1239.182 kb on - strand, within ABCV34_RS05700at 1239.182 kb on - strand, within ABCV34_RS05700at 1239.182 kb on - strand, within ABCV34_RS05700at 1239.182 kb on - strand, within ABCV34_RS05700at 1239.182 kb on - strand, within ABCV34_RS05700at 1239.194 kb on + strand, within ABCV34_RS05700at 1239.194 kb on + strand, within ABCV34_RS05700at 1239.194 kb on + strand, within ABCV34_RS05700at 1239.195 kb on - strand, within ABCV34_RS05700at 1239.195 kb on - strand, within ABCV34_RS05700at 1239.201 kb on + strandat 1239.202 kb on - strandat 1239.202 kb on - strandat 1239.202 kb on - strandat 1239.290 kb on + strandat 1239.290 kb on + strandat 1239.291 kb on - strandat 1239.291 kb on - strandat 1239.291 kb on - strandat 1239.333 kb on + strandat 1239.333 kb on + strandat 1239.334 kb on - strandat 1239.334 kb on - strandat 1239.334 kb on - strandat 1239.334 kb on - strandat 1239.334 kb on - strandat 1239.334 kb on - strandat 1239.334 kb on - strandat 1239.334 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW300; TreatmentDuration=2hrs; Outgrowth=R2A_Kan10_Lactate
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1,237,511 + ABCV34_RS05685 0.43 -0.9
1,237,511 + ABCV34_RS05685 0.43 -0.8
1,237,511 + ABCV34_RS05685 0.43 -2.3
1,237,511 + ABCV34_RS05685 0.43 -1.6
1,237,511 + ABCV34_RS05685 0.43 +2.0
1,237,511 + ABCV34_RS05685 0.43 -1.0
1,237,511 + ABCV34_RS05685 0.43 -0.8
1,237,512 - ABCV34_RS05685 0.43 -2.6
1,237,512 - ABCV34_RS05685 0.43 -2.4
1,237,747 + ABCV34_RS05685 0.87 -2.9
1,237,747 + ABCV34_RS05685 0.87 -0.8
1,237,748 - ABCV34_RS05685 0.87 -1.4
1,237,748 - ABCV34_RS05685 0.87 -1.6
1,237,748 - ABCV34_RS05685 0.87 -1.3
1,237,748 - ABCV34_RS05685 0.87 -1.9
1,237,950 + ABCV34_RS05690 0.40 -0.8
1,237,950 + ABCV34_RS05690 0.40 +1.0
1,237,950 + ABCV34_RS05690 0.40 +0.8
1,237,950 + ABCV34_RS05690 0.40 -1.5
1,237,951 - ABCV34_RS05690 0.40 -0.6
1,238,004 - ABCV34_RS05690 0.56 +0.4
1,238,532 + ABCV34_RS05695 0.40 -2.7
1,238,532 + ABCV34_RS05695 0.40 -1.2
1,238,532 + ABCV34_RS05695 0.40 -1.0
1,238,532 + ABCV34_RS05695 0.40 +0.0
1,238,532 + ABCV34_RS05695 0.40 -2.3
1,238,533 - ABCV34_RS05695 0.40 +1.0
1,238,533 - ABCV34_RS05695 0.40 -1.3
1,238,533 - ABCV34_RS05695 0.40 -1.7
1,238,533 - ABCV34_RS05695 0.40 +1.4
1,238,544 + ABCV34_RS05695 0.41 +0.6
1,238,544 + ABCV34_RS05695 0.41 -2.3
1,238,545 - ABCV34_RS05695 0.42 -1.0
1,238,545 - ABCV34_RS05695 0.42 +1.1
1,238,570 + ABCV34_RS05695 0.45 -2.0
1,238,570 + ABCV34_RS05695 0.45 -0.8
1,238,570 + ABCV34_RS05695 0.45 -1.9
1,238,570 + ABCV34_RS05695 0.45 -1.7
1,238,570 + ABCV34_RS05695 0.45 -2.2
1,238,570 + ABCV34_RS05695 0.45 -0.9
1,238,571 - ABCV34_RS05695 0.45 -0.1
1,238,571 - ABCV34_RS05695 0.45 -1.2
1,238,663 + ABCV34_RS05695 0.59 -1.0
1,238,727 + ABCV34_RS05695 0.68 -0.9
1,238,727 + ABCV34_RS05695 0.68 -1.3
1,238,727 + ABCV34_RS05695 0.68 -0.8
1,238,727 + ABCV34_RS05695 0.68 +1.2
1,238,728 - ABCV34_RS05695 0.68 -1.0
1,238,728 - ABCV34_RS05695 0.68 -1.3
1,238,728 - ABCV34_RS05695 0.68 -1.9
1,238,728 - ABCV34_RS05695 0.68 -1.8
1,238,728 - ABCV34_RS05695 0.68 -1.2
1,238,728 - ABCV34_RS05695 0.68 -1.6
1,238,728 - ABCV34_RS05695 0.68 -1.7
1,238,937 + +0.1
1,238,937 + -0.1
1,238,938 - -1.2
1,238,938 - +0.4
1,238,938 - +0.8
1,238,938 - -0.3
1,238,938 - -0.3
1,238,938 - -0.5
1,238,986 + ABCV34_RS05700 0.11 +0.3
1,238,986 + ABCV34_RS05700 0.11 -0.6
1,238,986 + ABCV34_RS05700 0.11 -0.3
1,238,986 + ABCV34_RS05700 0.11 -1.6
1,238,987 - ABCV34_RS05700 0.11 +0.8
1,238,987 - ABCV34_RS05700 0.11 -1.2
1,238,987 - ABCV34_RS05700 0.11 -0.1
1,238,987 - ABCV34_RS05700 0.11 -1.4
1,238,987 - ABCV34_RS05700 0.11 +1.0
1,238,987 - ABCV34_RS05700 0.11 -1.1
1,239,181 + ABCV34_RS05700 0.83 -1.7
1,239,181 + ABCV34_RS05700 0.83 -1.4
1,239,181 + ABCV34_RS05700 0.83 -0.9
1,239,181 + ABCV34_RS05700 0.83 -2.6
1,239,182 - ABCV34_RS05700 0.84 -1.6
1,239,182 - ABCV34_RS05700 0.84 -0.9
1,239,182 - ABCV34_RS05700 0.84 -1.8
1,239,182 - ABCV34_RS05700 0.84 -2.0
1,239,182 - ABCV34_RS05700 0.84 -0.3
1,239,194 + ABCV34_RS05700 0.88 -2.0
1,239,194 + ABCV34_RS05700 0.88 -0.5
1,239,194 + ABCV34_RS05700 0.88 -0.7
1,239,195 - ABCV34_RS05700 0.89 -0.4
1,239,195 - ABCV34_RS05700 0.89 +0.7
1,239,201 + -1.0
1,239,202 - -1.4
1,239,202 - -2.7
1,239,202 - -1.3
1,239,290 + -0.2
1,239,290 + -0.1
1,239,291 - -1.3
1,239,291 - -2.2
1,239,291 - +0.8
1,239,333 + +0.3
1,239,333 + +0.0
1,239,334 - +0.3
1,239,334 - +2.0
1,239,334 - -1.4
1,239,334 - -0.7
1,239,334 - -1.3
1,239,334 - -0.4
1,239,334 - -0.7
1,239,334 - -0.3

Or see this region's nucleotide sequence