Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS05685

Experiment: Survival; Treatment=FW300; TreatmentDuration=2hrs; Outgrowth=R2A_Kan10_Lactate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABCV34_RS05680 and ABCV34_RS05685 overlap by 4 nucleotidesABCV34_RS05685 and ABCV34_RS05690 are separated by 6 nucleotidesABCV34_RS05690 and ABCV34_RS05695 are separated by 113 nucleotides ABCV34_RS05680: ABCV34_RS05680 - flagellar motor switch protein FliM, at 1,236,266 to 1,237,282 _RS05680 ABCV34_RS05685: ABCV34_RS05685 - flagellar motor switch protein FliN, at 1,237,279 to 1,237,815 _RS05685 ABCV34_RS05690: ABCV34_RS05690 - flagellar biosynthetic protein FliO, at 1,237,822 to 1,238,145 _RS05690 ABCV34_RS05695: ABCV34_RS05695 - flagellar type III secretion system pore protein FliP, at 1,238,259 to 1,238,945 _RS05695 Position (kb) 1237 1238Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1236.383 kb on + strand, within ABCV34_RS05680at 1236.390 kb on + strand, within ABCV34_RS05680at 1236.390 kb on + strand, within ABCV34_RS05680at 1236.390 kb on + strand, within ABCV34_RS05680at 1236.390 kb on + strand, within ABCV34_RS05680at 1236.390 kb on + strand, within ABCV34_RS05680at 1236.390 kb on + strand, within ABCV34_RS05680at 1236.390 kb on + strand, within ABCV34_RS05680at 1236.390 kb on + strand, within ABCV34_RS05680at 1236.390 kb on + strand, within ABCV34_RS05680at 1236.390 kb on + strand, within ABCV34_RS05680at 1236.391 kb on - strand, within ABCV34_RS05680at 1236.391 kb on - strand, within ABCV34_RS05680at 1236.391 kb on - strand, within ABCV34_RS05680at 1236.391 kb on - strand, within ABCV34_RS05680at 1236.517 kb on + strand, within ABCV34_RS05680at 1236.517 kb on + strand, within ABCV34_RS05680at 1236.517 kb on + strand, within ABCV34_RS05680at 1236.518 kb on - strand, within ABCV34_RS05680at 1236.536 kb on + strand, within ABCV34_RS05680at 1236.536 kb on + strand, within ABCV34_RS05680at 1236.536 kb on + strand, within ABCV34_RS05680at 1236.536 kb on + strand, within ABCV34_RS05680at 1236.536 kb on + strand, within ABCV34_RS05680at 1236.536 kb on + strand, within ABCV34_RS05680at 1236.536 kb on + strand, within ABCV34_RS05680at 1236.536 kb on + strand, within ABCV34_RS05680at 1236.537 kb on - strand, within ABCV34_RS05680at 1236.537 kb on - strand, within ABCV34_RS05680at 1236.537 kb on - strand, within ABCV34_RS05680at 1236.580 kb on + strand, within ABCV34_RS05680at 1236.580 kb on + strand, within ABCV34_RS05680at 1236.580 kb on + strand, within ABCV34_RS05680at 1236.580 kb on + strand, within ABCV34_RS05680at 1236.580 kb on + strand, within ABCV34_RS05680at 1236.581 kb on - strand, within ABCV34_RS05680at 1236.623 kb on + strand, within ABCV34_RS05680at 1236.623 kb on + strand, within ABCV34_RS05680at 1236.624 kb on - strand, within ABCV34_RS05680at 1236.624 kb on - strand, within ABCV34_RS05680at 1236.624 kb on - strand, within ABCV34_RS05680at 1236.624 kb on - strand, within ABCV34_RS05680at 1236.624 kb on - strand, within ABCV34_RS05680at 1236.624 kb on - strand, within ABCV34_RS05680at 1236.624 kb on - strand, within ABCV34_RS05680at 1236.639 kb on + strand, within ABCV34_RS05680at 1236.639 kb on + strand, within ABCV34_RS05680at 1236.640 kb on - strand, within ABCV34_RS05680at 1236.680 kb on + strand, within ABCV34_RS05680at 1236.680 kb on + strand, within ABCV34_RS05680at 1236.681 kb on - strand, within ABCV34_RS05680at 1236.681 kb on - strand, within ABCV34_RS05680at 1236.764 kb on + strand, within ABCV34_RS05680at 1236.764 kb on + strand, within ABCV34_RS05680at 1236.764 kb on + strand, within ABCV34_RS05680at 1236.764 kb on + strand, within ABCV34_RS05680at 1236.764 kb on + strand, within ABCV34_RS05680at 1236.764 kb on + strand, within ABCV34_RS05680at 1236.764 kb on + strand, within ABCV34_RS05680at 1236.764 kb on + strand, within ABCV34_RS05680at 1236.764 kb on + strand, within ABCV34_RS05680at 1236.764 kb on + strand, within ABCV34_RS05680at 1236.764 kb on + strand, within ABCV34_RS05680at 1236.764 kb on + strand, within ABCV34_RS05680at 1236.764 kb on + strand, within ABCV34_RS05680at 1236.764 kb on + strand, within ABCV34_RS05680at 1236.765 kb on - strand, within ABCV34_RS05680at 1236.765 kb on - strand, within ABCV34_RS05680at 1236.765 kb on - strand, within ABCV34_RS05680at 1236.765 kb on - strand, within ABCV34_RS05680at 1236.765 kb on - strand, within ABCV34_RS05680at 1236.765 kb on - strand, within ABCV34_RS05680at 1236.806 kb on + strand, within ABCV34_RS05680at 1236.806 kb on + strand, within ABCV34_RS05680at 1236.806 kb on + strand, within ABCV34_RS05680at 1236.806 kb on + strand, within ABCV34_RS05680at 1236.807 kb on - strand, within ABCV34_RS05680at 1236.807 kb on - strand, within ABCV34_RS05680at 1236.808 kb on + strand, within ABCV34_RS05680at 1236.808 kb on + strand, within ABCV34_RS05680at 1236.808 kb on + strand, within ABCV34_RS05680at 1236.809 kb on - strand, within ABCV34_RS05680at 1236.867 kb on + strand, within ABCV34_RS05680at 1236.929 kb on + strand, within ABCV34_RS05680at 1236.930 kb on - strand, within ABCV34_RS05680at 1237.208 kb on + strandat 1237.511 kb on + strand, within ABCV34_RS05685at 1237.511 kb on + strand, within ABCV34_RS05685at 1237.511 kb on + strand, within ABCV34_RS05685at 1237.511 kb on + strand, within ABCV34_RS05685at 1237.511 kb on + strand, within ABCV34_RS05685at 1237.511 kb on + strand, within ABCV34_RS05685at 1237.511 kb on + strand, within ABCV34_RS05685at 1237.512 kb on - strand, within ABCV34_RS05685at 1237.512 kb on - strand, within ABCV34_RS05685at 1237.747 kb on + strand, within ABCV34_RS05685at 1237.747 kb on + strand, within ABCV34_RS05685at 1237.748 kb on - strand, within ABCV34_RS05685at 1237.748 kb on - strand, within ABCV34_RS05685at 1237.748 kb on - strand, within ABCV34_RS05685at 1237.748 kb on - strand, within ABCV34_RS05685at 1237.950 kb on + strand, within ABCV34_RS05690at 1237.950 kb on + strand, within ABCV34_RS05690at 1237.950 kb on + strand, within ABCV34_RS05690at 1237.950 kb on + strand, within ABCV34_RS05690at 1237.951 kb on - strand, within ABCV34_RS05690at 1238.004 kb on - strand, within ABCV34_RS05690at 1238.532 kb on + strand, within ABCV34_RS05695at 1238.532 kb on + strand, within ABCV34_RS05695at 1238.532 kb on + strand, within ABCV34_RS05695at 1238.532 kb on + strand, within ABCV34_RS05695at 1238.532 kb on + strand, within ABCV34_RS05695at 1238.533 kb on - strand, within ABCV34_RS05695at 1238.533 kb on - strand, within ABCV34_RS05695at 1238.533 kb on - strand, within ABCV34_RS05695at 1238.533 kb on - strand, within ABCV34_RS05695at 1238.544 kb on + strand, within ABCV34_RS05695at 1238.544 kb on + strand, within ABCV34_RS05695at 1238.545 kb on - strand, within ABCV34_RS05695at 1238.545 kb on - strand, within ABCV34_RS05695at 1238.570 kb on + strand, within ABCV34_RS05695at 1238.570 kb on + strand, within ABCV34_RS05695at 1238.570 kb on + strand, within ABCV34_RS05695at 1238.570 kb on + strand, within ABCV34_RS05695at 1238.570 kb on + strand, within ABCV34_RS05695at 1238.570 kb on + strand, within ABCV34_RS05695at 1238.571 kb on - strand, within ABCV34_RS05695at 1238.571 kb on - strand, within ABCV34_RS05695at 1238.663 kb on + strand, within ABCV34_RS05695at 1238.727 kb on + strand, within ABCV34_RS05695at 1238.727 kb on + strand, within ABCV34_RS05695at 1238.727 kb on + strand, within ABCV34_RS05695at 1238.727 kb on + strand, within ABCV34_RS05695at 1238.728 kb on - strand, within ABCV34_RS05695at 1238.728 kb on - strand, within ABCV34_RS05695at 1238.728 kb on - strand, within ABCV34_RS05695at 1238.728 kb on - strand, within ABCV34_RS05695at 1238.728 kb on - strand, within ABCV34_RS05695at 1238.728 kb on - strand, within ABCV34_RS05695at 1238.728 kb on - strand, within ABCV34_RS05695

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW300; TreatmentDuration=2hrs; Outgrowth=R2A_Kan10_Lactate
remove
1,236,383 + ABCV34_RS05680 0.12 -0.6
1,236,390 + ABCV34_RS05680 0.12 -0.3
1,236,390 + ABCV34_RS05680 0.12 -1.3
1,236,390 + ABCV34_RS05680 0.12 +0.1
1,236,390 + ABCV34_RS05680 0.12 -0.8
1,236,390 + ABCV34_RS05680 0.12 +1.0
1,236,390 + ABCV34_RS05680 0.12 -1.0
1,236,390 + ABCV34_RS05680 0.12 -1.7
1,236,390 + ABCV34_RS05680 0.12 +0.8
1,236,390 + ABCV34_RS05680 0.12 +1.0
1,236,390 + ABCV34_RS05680 0.12 +0.5
1,236,391 - ABCV34_RS05680 0.12 -3.0
1,236,391 - ABCV34_RS05680 0.12 -1.3
1,236,391 - ABCV34_RS05680 0.12 +1.0
1,236,391 - ABCV34_RS05680 0.12 -1.4
1,236,517 + ABCV34_RS05680 0.25 -1.3
1,236,517 + ABCV34_RS05680 0.25 -0.8
1,236,517 + ABCV34_RS05680 0.25 +2.0
1,236,518 - ABCV34_RS05680 0.25 +0.0
1,236,536 + ABCV34_RS05680 0.27 -0.4
1,236,536 + ABCV34_RS05680 0.27 -0.1
1,236,536 + ABCV34_RS05680 0.27 -1.3
1,236,536 + ABCV34_RS05680 0.27 -2.7
1,236,536 + ABCV34_RS05680 0.27 -0.9
1,236,536 + ABCV34_RS05680 0.27 -1.3
1,236,536 + ABCV34_RS05680 0.27 +0.2
1,236,536 + ABCV34_RS05680 0.27 -2.6
1,236,537 - ABCV34_RS05680 0.27 -2.3
1,236,537 - ABCV34_RS05680 0.27 -0.2
1,236,537 - ABCV34_RS05680 0.27 +0.1
1,236,580 + ABCV34_RS05680 0.31 +0.6
1,236,580 + ABCV34_RS05680 0.31 -1.4
1,236,580 + ABCV34_RS05680 0.31 -1.1
1,236,580 + ABCV34_RS05680 0.31 -2.1
1,236,580 + ABCV34_RS05680 0.31 -0.4
1,236,581 - ABCV34_RS05680 0.31 -1.3
1,236,623 + ABCV34_RS05680 0.35 +0.3
1,236,623 + ABCV34_RS05680 0.35 -2.2
1,236,624 - ABCV34_RS05680 0.35 -1.2
1,236,624 - ABCV34_RS05680 0.35 +1.0
1,236,624 - ABCV34_RS05680 0.35 +0.0
1,236,624 - ABCV34_RS05680 0.35 -1.3
1,236,624 - ABCV34_RS05680 0.35 -2.1
1,236,624 - ABCV34_RS05680 0.35 -0.3
1,236,624 - ABCV34_RS05680 0.35 -2.0
1,236,639 + ABCV34_RS05680 0.37 -0.3
1,236,639 + ABCV34_RS05680 0.37 -1.4
1,236,640 - ABCV34_RS05680 0.37 -1.4
1,236,680 + ABCV34_RS05680 0.41 -1.0
1,236,680 + ABCV34_RS05680 0.41 -0.1
1,236,681 - ABCV34_RS05680 0.41 -1.3
1,236,681 - ABCV34_RS05680 0.41 -1.8
1,236,764 + ABCV34_RS05680 0.49 -3.1
1,236,764 + ABCV34_RS05680 0.49 -0.2
1,236,764 + ABCV34_RS05680 0.49 -0.9
1,236,764 + ABCV34_RS05680 0.49 -2.9
1,236,764 + ABCV34_RS05680 0.49 -0.2
1,236,764 + ABCV34_RS05680 0.49 +1.5
1,236,764 + ABCV34_RS05680 0.49 -2.3
1,236,764 + ABCV34_RS05680 0.49 -2.6
1,236,764 + ABCV34_RS05680 0.49 -1.3
1,236,764 + ABCV34_RS05680 0.49 -1.1
1,236,764 + ABCV34_RS05680 0.49 +1.0
1,236,764 + ABCV34_RS05680 0.49 -0.4
1,236,764 + ABCV34_RS05680 0.49 -0.4
1,236,764 + ABCV34_RS05680 0.49 -2.8
1,236,765 - ABCV34_RS05680 0.49 -1.0
1,236,765 - ABCV34_RS05680 0.49 -2.6
1,236,765 - ABCV34_RS05680 0.49 -1.2
1,236,765 - ABCV34_RS05680 0.49 +0.9
1,236,765 - ABCV34_RS05680 0.49 +0.0
1,236,765 - ABCV34_RS05680 0.49 -0.9
1,236,806 + ABCV34_RS05680 0.53 -3.9
1,236,806 + ABCV34_RS05680 0.53 -1.4
1,236,806 + ABCV34_RS05680 0.53 -1.2
1,236,806 + ABCV34_RS05680 0.53 -0.7
1,236,807 - ABCV34_RS05680 0.53 +0.2
1,236,807 - ABCV34_RS05680 0.53 -2.4
1,236,808 + ABCV34_RS05680 0.53 -1.0
1,236,808 + ABCV34_RS05680 0.53 -1.6
1,236,808 + ABCV34_RS05680 0.53 -2.5
1,236,809 - ABCV34_RS05680 0.53 -1.2
1,236,867 + ABCV34_RS05680 0.59 -0.4
1,236,929 + ABCV34_RS05680 0.65 -2.2
1,236,930 - ABCV34_RS05680 0.65 -0.1
1,237,208 + +0.4
1,237,511 + ABCV34_RS05685 0.43 -0.9
1,237,511 + ABCV34_RS05685 0.43 -0.8
1,237,511 + ABCV34_RS05685 0.43 -2.3
1,237,511 + ABCV34_RS05685 0.43 -1.6
1,237,511 + ABCV34_RS05685 0.43 +2.0
1,237,511 + ABCV34_RS05685 0.43 -1.0
1,237,511 + ABCV34_RS05685 0.43 -0.8
1,237,512 - ABCV34_RS05685 0.43 -2.6
1,237,512 - ABCV34_RS05685 0.43 -2.4
1,237,747 + ABCV34_RS05685 0.87 -2.9
1,237,747 + ABCV34_RS05685 0.87 -0.8
1,237,748 - ABCV34_RS05685 0.87 -1.4
1,237,748 - ABCV34_RS05685 0.87 -1.6
1,237,748 - ABCV34_RS05685 0.87 -1.3
1,237,748 - ABCV34_RS05685 0.87 -1.9
1,237,950 + ABCV34_RS05690 0.40 -0.8
1,237,950 + ABCV34_RS05690 0.40 +1.0
1,237,950 + ABCV34_RS05690 0.40 +0.8
1,237,950 + ABCV34_RS05690 0.40 -1.5
1,237,951 - ABCV34_RS05690 0.40 -0.6
1,238,004 - ABCV34_RS05690 0.56 +0.4
1,238,532 + ABCV34_RS05695 0.40 -2.7
1,238,532 + ABCV34_RS05695 0.40 -1.2
1,238,532 + ABCV34_RS05695 0.40 -1.0
1,238,532 + ABCV34_RS05695 0.40 +0.0
1,238,532 + ABCV34_RS05695 0.40 -2.3
1,238,533 - ABCV34_RS05695 0.40 +1.0
1,238,533 - ABCV34_RS05695 0.40 -1.3
1,238,533 - ABCV34_RS05695 0.40 -1.7
1,238,533 - ABCV34_RS05695 0.40 +1.4
1,238,544 + ABCV34_RS05695 0.41 +0.6
1,238,544 + ABCV34_RS05695 0.41 -2.3
1,238,545 - ABCV34_RS05695 0.42 -1.0
1,238,545 - ABCV34_RS05695 0.42 +1.1
1,238,570 + ABCV34_RS05695 0.45 -2.0
1,238,570 + ABCV34_RS05695 0.45 -0.8
1,238,570 + ABCV34_RS05695 0.45 -1.9
1,238,570 + ABCV34_RS05695 0.45 -1.7
1,238,570 + ABCV34_RS05695 0.45 -2.2
1,238,570 + ABCV34_RS05695 0.45 -0.9
1,238,571 - ABCV34_RS05695 0.45 -0.1
1,238,571 - ABCV34_RS05695 0.45 -1.2
1,238,663 + ABCV34_RS05695 0.59 -1.0
1,238,727 + ABCV34_RS05695 0.68 -0.9
1,238,727 + ABCV34_RS05695 0.68 -1.3
1,238,727 + ABCV34_RS05695 0.68 -0.8
1,238,727 + ABCV34_RS05695 0.68 +1.2
1,238,728 - ABCV34_RS05695 0.68 -1.0
1,238,728 - ABCV34_RS05695 0.68 -1.3
1,238,728 - ABCV34_RS05695 0.68 -1.9
1,238,728 - ABCV34_RS05695 0.68 -1.8
1,238,728 - ABCV34_RS05695 0.68 -1.2
1,238,728 - ABCV34_RS05695 0.68 -1.6
1,238,728 - ABCV34_RS05695 0.68 -1.7

Or see this region's nucleotide sequence