Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS05335

Experiment: Survival; Treatment=FW300; TreatmentDuration=2hrs; Outgrowth=R2A_Kan10_Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABCV34_RS05330 and ABCV34_RS05335 are separated by 471 nucleotidesABCV34_RS05335 and ABCV34_RS05340 overlap by 4 nucleotidesABCV34_RS05340 and ABCV34_RS05345 are separated by 32 nucleotides ABCV34_RS05330: ABCV34_RS05330 - exodeoxyribonuclease VII large subunit, at 1,163,574 to 1,164,878 _RS05330 ABCV34_RS05335: ABCV34_RS05335 - MotA/TolQ/ExbB proton channel family protein, at 1,165,350 to 1,165,958 _RS05335 ABCV34_RS05340: ABCV34_RS05340 - biopolymer transporter ExbD, at 1,165,955 to 1,166,368 _RS05340 ABCV34_RS05345: ABCV34_RS05345 - tetraacyldisaccharide 4'-kinase, at 1,166,401 to 1,167,462 _RS05345 Position (kb) 1165 1166Strain fitness (log2 ratio) -3 -2 -1 0 1at 1164.583 kb on + strand, within ABCV34_RS05330at 1164.584 kb on - strand, within ABCV34_RS05330at 1164.584 kb on - strand, within ABCV34_RS05330at 1164.706 kb on + strand, within ABCV34_RS05330at 1164.706 kb on + strand, within ABCV34_RS05330at 1164.706 kb on + strand, within ABCV34_RS05330at 1164.706 kb on + strand, within ABCV34_RS05330at 1164.706 kb on + strand, within ABCV34_RS05330at 1164.706 kb on + strand, within ABCV34_RS05330at 1164.706 kb on + strand, within ABCV34_RS05330at 1164.707 kb on - strand, within ABCV34_RS05330at 1164.707 kb on - strand, within ABCV34_RS05330at 1164.707 kb on - strand, within ABCV34_RS05330at 1164.707 kb on - strand, within ABCV34_RS05330at 1164.856 kb on + strandat 1164.856 kb on + strandat 1164.856 kb on + strandat 1164.857 kb on - strandat 1164.886 kb on + strandat 1164.887 kb on - strandat 1164.973 kb on + strandat 1165.025 kb on + strandat 1165.072 kb on + strandat 1165.072 kb on + strandat 1165.143 kb on - strandat 1165.199 kb on + strandat 1165.301 kb on + strandat 1165.301 kb on + strandat 1165.301 kb on + strandat 1165.301 kb on + strandat 1165.301 kb on + strandat 1165.302 kb on - strandat 1165.302 kb on - strandat 1165.302 kb on - strandat 1165.307 kb on - strandat 1165.307 kb on - strandat 1165.429 kb on + strand, within ABCV34_RS05335at 1165.429 kb on + strand, within ABCV34_RS05335at 1165.430 kb on - strand, within ABCV34_RS05335at 1165.430 kb on - strand, within ABCV34_RS05335at 1165.430 kb on - strand, within ABCV34_RS05335at 1165.430 kb on - strand, within ABCV34_RS05335at 1165.430 kb on - strand, within ABCV34_RS05335at 1165.430 kb on - strand, within ABCV34_RS05335at 1165.430 kb on - strand, within ABCV34_RS05335at 1165.534 kb on + strand, within ABCV34_RS05335at 1165.812 kb on + strand, within ABCV34_RS05335at 1165.812 kb on + strand, within ABCV34_RS05335at 1165.812 kb on + strand, within ABCV34_RS05335at 1165.812 kb on + strand, within ABCV34_RS05335at 1165.812 kb on + strand, within ABCV34_RS05335at 1165.813 kb on - strand, within ABCV34_RS05335at 1165.813 kb on - strand, within ABCV34_RS05335at 1165.813 kb on - strand, within ABCV34_RS05335at 1165.866 kb on + strand, within ABCV34_RS05335at 1165.866 kb on + strand, within ABCV34_RS05335at 1165.866 kb on + strand, within ABCV34_RS05335at 1165.887 kb on + strand, within ABCV34_RS05335at 1166.162 kb on + strand, within ABCV34_RS05340

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW300; TreatmentDuration=2hrs; Outgrowth=R2A_Kan10_Lactate
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1,164,583 + ABCV34_RS05330 0.77 -2.4
1,164,584 - ABCV34_RS05330 0.77 -0.5
1,164,584 - ABCV34_RS05330 0.77 -1.4
1,164,706 + ABCV34_RS05330 0.87 -1.1
1,164,706 + ABCV34_RS05330 0.87 -2.8
1,164,706 + ABCV34_RS05330 0.87 -2.1
1,164,706 + ABCV34_RS05330 0.87 -1.7
1,164,706 + ABCV34_RS05330 0.87 -1.5
1,164,706 + ABCV34_RS05330 0.87 -1.4
1,164,706 + ABCV34_RS05330 0.87 -3.4
1,164,707 - ABCV34_RS05330 0.87 +1.0
1,164,707 - ABCV34_RS05330 0.87 -1.1
1,164,707 - ABCV34_RS05330 0.87 -3.3
1,164,707 - ABCV34_RS05330 0.87 +0.7
1,164,856 + -0.4
1,164,856 + -1.3
1,164,856 + -0.4
1,164,857 - -1.3
1,164,886 + -2.6
1,164,887 - -0.6
1,164,973 + +0.3
1,165,025 + -2.3
1,165,072 + -1.1
1,165,072 + +0.1
1,165,143 - -1.0
1,165,199 + +1.3
1,165,301 + -0.8
1,165,301 + -2.1
1,165,301 + -0.5
1,165,301 + -0.1
1,165,301 + +0.0
1,165,302 - -0.9
1,165,302 - -0.8
1,165,302 - -1.3
1,165,307 - -0.6
1,165,307 - -1.2
1,165,429 + ABCV34_RS05335 0.13 +0.4
1,165,429 + ABCV34_RS05335 0.13 -1.9
1,165,430 - ABCV34_RS05335 0.13 +1.0
1,165,430 - ABCV34_RS05335 0.13 -0.2
1,165,430 - ABCV34_RS05335 0.13 -0.7
1,165,430 - ABCV34_RS05335 0.13 -1.8
1,165,430 - ABCV34_RS05335 0.13 -1.3
1,165,430 - ABCV34_RS05335 0.13 -0.4
1,165,430 - ABCV34_RS05335 0.13 +0.9
1,165,534 + ABCV34_RS05335 0.30 -0.3
1,165,812 + ABCV34_RS05335 0.76 +0.4
1,165,812 + ABCV34_RS05335 0.76 -2.6
1,165,812 + ABCV34_RS05335 0.76 -1.5
1,165,812 + ABCV34_RS05335 0.76 -1.0
1,165,812 + ABCV34_RS05335 0.76 -1.6
1,165,813 - ABCV34_RS05335 0.76 -0.8
1,165,813 - ABCV34_RS05335 0.76 +0.0
1,165,813 - ABCV34_RS05335 0.76 -2.1
1,165,866 + ABCV34_RS05335 0.85 -2.4
1,165,866 + ABCV34_RS05335 0.85 -0.3
1,165,866 + ABCV34_RS05335 0.85 -1.1
1,165,887 + ABCV34_RS05335 0.88 -1.6
1,166,162 + ABCV34_RS05340 0.50 -0.6

Or see this region's nucleotide sequence