Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS04180

Experiment: Survival; Treatment=FW300; TreatmentDuration=2hrs; Outgrowth=R2A_Kan10_Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABCV34_RS04170 and ABCV34_RS04175 overlap by 4 nucleotidesABCV34_RS04175 and ABCV34_RS04180 are separated by 31 nucleotidesABCV34_RS04180 and ABCV34_RS04185 are separated by 128 nucleotidesABCV34_RS04185 and ABCV34_RS04190 are separated by 68 nucleotides ABCV34_RS04170: ABCV34_RS04170 - response regulator transcription factor, at 908,919 to 909,548 _RS04170 ABCV34_RS04175: ABCV34_RS04175 - bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD, at 909,545 to 910,399 _RS04175 ABCV34_RS04180: ABCV34_RS04180 - M3 family metallopeptidase, at 910,431 to 912,512 _RS04180 ABCV34_RS04185: ABCV34_RS04185 - SCO family protein, at 912,641 to 913,198 _RS04185 ABCV34_RS04190: ABCV34_RS04190 - dihydrolipoyl dehydrogenase, at 913,267 to 914,658 _RS04190 Position (kb) 910 911 912 913Strain fitness (log2 ratio) -3 -2 -1 0 1at 910.770 kb on + strand, within ABCV34_RS04180at 910.806 kb on + strand, within ABCV34_RS04180at 911.451 kb on + strand, within ABCV34_RS04180at 911.622 kb on + strand, within ABCV34_RS04180at 912.169 kb on + strand, within ABCV34_RS04180at 912.170 kb on - strand, within ABCV34_RS04180at 912.274 kb on - strand, within ABCV34_RS04180at 912.274 kb on - strand, within ABCV34_RS04180at 912.279 kb on + strand, within ABCV34_RS04180at 912.623 kb on + strandat 912.657 kb on + strandat 912.803 kb on + strand, within ABCV34_RS04185at 912.868 kb on - strand, within ABCV34_RS04185at 912.947 kb on + strand, within ABCV34_RS04185at 912.947 kb on + strand, within ABCV34_RS04185at 912.947 kb on + strand, within ABCV34_RS04185at 912.947 kb on + strand, within ABCV34_RS04185at 912.947 kb on + strand, within ABCV34_RS04185at 912.947 kb on + strand, within ABCV34_RS04185at 912.947 kb on + strand, within ABCV34_RS04185at 912.947 kb on + strand, within ABCV34_RS04185at 912.947 kb on + strand, within ABCV34_RS04185at 912.948 kb on - strand, within ABCV34_RS04185at 912.948 kb on - strand, within ABCV34_RS04185at 912.948 kb on - strand, within ABCV34_RS04185at 912.948 kb on - strand, within ABCV34_RS04185at 912.948 kb on - strand, within ABCV34_RS04185at 912.948 kb on - strand, within ABCV34_RS04185at 912.948 kb on - strand, within ABCV34_RS04185at 912.948 kb on - strand, within ABCV34_RS04185at 912.948 kb on - strand, within ABCV34_RS04185at 912.948 kb on - strand, within ABCV34_RS04185at 912.948 kb on - strand, within ABCV34_RS04185at 912.989 kb on - strand, within ABCV34_RS04185at 912.989 kb on - strand, within ABCV34_RS04185at 913.034 kb on + strand, within ABCV34_RS04185at 913.076 kb on + strand, within ABCV34_RS04185at 913.103 kb on + strand, within ABCV34_RS04185at 913.103 kb on + strand, within ABCV34_RS04185at 913.103 kb on + strand, within ABCV34_RS04185at 913.103 kb on + strand, within ABCV34_RS04185at 913.103 kb on + strand, within ABCV34_RS04185at 913.103 kb on + strand, within ABCV34_RS04185at 913.103 kb on + strand, within ABCV34_RS04185at 913.103 kb on + strand, within ABCV34_RS04185at 913.103 kb on + strand, within ABCV34_RS04185at 913.104 kb on - strand, within ABCV34_RS04185at 913.104 kb on - strand, within ABCV34_RS04185at 913.104 kb on - strand, within ABCV34_RS04185at 913.104 kb on - strand, within ABCV34_RS04185at 913.269 kb on - strandat 913.331 kb on + strandat 913.331 kb on + strandat 913.331 kb on + strandat 913.331 kb on + strandat 913.332 kb on - strandat 913.332 kb on - strandat 913.332 kb on - strandat 913.463 kb on + strand, within ABCV34_RS04190at 913.463 kb on + strand, within ABCV34_RS04190at 913.463 kb on + strand, within ABCV34_RS04190at 913.463 kb on + strand, within ABCV34_RS04190at 913.463 kb on + strand, within ABCV34_RS04190at 913.463 kb on + strand, within ABCV34_RS04190at 913.463 kb on + strand, within ABCV34_RS04190at 913.463 kb on + strand, within ABCV34_RS04190at 913.463 kb on + strand, within ABCV34_RS04190at 913.463 kb on + strand, within ABCV34_RS04190at 913.463 kb on + strand, within ABCV34_RS04190at 913.463 kb on + strand, within ABCV34_RS04190at 913.463 kb on + strand, within ABCV34_RS04190at 913.464 kb on - strand, within ABCV34_RS04190at 913.464 kb on - strand, within ABCV34_RS04190at 913.464 kb on - strand, within ABCV34_RS04190at 913.464 kb on - strand, within ABCV34_RS04190at 913.464 kb on - strand, within ABCV34_RS04190at 913.464 kb on - strand, within ABCV34_RS04190at 913.464 kb on - strand, within ABCV34_RS04190at 913.464 kb on - strand, within ABCV34_RS04190at 913.464 kb on - strand, within ABCV34_RS04190at 913.464 kb on - strand, within ABCV34_RS04190at 913.464 kb on - strand, within ABCV34_RS04190at 913.464 kb on - strand, within ABCV34_RS04190

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW300; TreatmentDuration=2hrs; Outgrowth=R2A_Kan10_Lactate
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910,770 + ABCV34_RS04180 0.16 -1.6
910,806 + ABCV34_RS04180 0.18 -1.3
911,451 + ABCV34_RS04180 0.49 -1.0
911,622 + ABCV34_RS04180 0.57 -1.3
912,169 + ABCV34_RS04180 0.83 -1.3
912,170 - ABCV34_RS04180 0.84 -1.9
912,274 - ABCV34_RS04180 0.89 +0.9
912,274 - ABCV34_RS04180 0.89 -1.6
912,279 + ABCV34_RS04180 0.89 +0.2
912,623 + -1.7
912,657 + -1.9
912,803 + ABCV34_RS04185 0.29 -3.6
912,868 - ABCV34_RS04185 0.41 +1.0
912,947 + ABCV34_RS04185 0.55 -1.3
912,947 + ABCV34_RS04185 0.55 -0.1
912,947 + ABCV34_RS04185 0.55 -1.2
912,947 + ABCV34_RS04185 0.55 -1.1
912,947 + ABCV34_RS04185 0.55 -1.1
912,947 + ABCV34_RS04185 0.55 -1.6
912,947 + ABCV34_RS04185 0.55 +0.0
912,947 + ABCV34_RS04185 0.55 +1.4
912,947 + ABCV34_RS04185 0.55 +0.4
912,948 - ABCV34_RS04185 0.55 -0.1
912,948 - ABCV34_RS04185 0.55 -2.5
912,948 - ABCV34_RS04185 0.55 -2.1
912,948 - ABCV34_RS04185 0.55 -1.3
912,948 - ABCV34_RS04185 0.55 +0.4
912,948 - ABCV34_RS04185 0.55 -1.4
912,948 - ABCV34_RS04185 0.55 -0.3
912,948 - ABCV34_RS04185 0.55 +0.4
912,948 - ABCV34_RS04185 0.55 -2.1
912,948 - ABCV34_RS04185 0.55 +0.7
912,948 - ABCV34_RS04185 0.55 +1.5
912,989 - ABCV34_RS04185 0.62 +0.8
912,989 - ABCV34_RS04185 0.62 +0.4
913,034 + ABCV34_RS04185 0.70 -0.4
913,076 + ABCV34_RS04185 0.78 -1.3
913,103 + ABCV34_RS04185 0.83 -2.3
913,103 + ABCV34_RS04185 0.83 -1.1
913,103 + ABCV34_RS04185 0.83 -0.2
913,103 + ABCV34_RS04185 0.83 -1.4
913,103 + ABCV34_RS04185 0.83 +0.0
913,103 + ABCV34_RS04185 0.83 -2.2
913,103 + ABCV34_RS04185 0.83 +0.3
913,103 + ABCV34_RS04185 0.83 -2.1
913,103 + ABCV34_RS04185 0.83 -0.9
913,104 - ABCV34_RS04185 0.83 -1.1
913,104 - ABCV34_RS04185 0.83 -2.3
913,104 - ABCV34_RS04185 0.83 -0.6
913,104 - ABCV34_RS04185 0.83 -1.3
913,269 - +0.6
913,331 + -0.3
913,331 + -2.6
913,331 + +0.4
913,331 + -0.6
913,332 - -1.9
913,332 - -1.3
913,332 - -1.0
913,463 + ABCV34_RS04190 0.14 +1.0
913,463 + ABCV34_RS04190 0.14 -1.6
913,463 + ABCV34_RS04190 0.14 +0.3
913,463 + ABCV34_RS04190 0.14 +0.4
913,463 + ABCV34_RS04190 0.14 -0.1
913,463 + ABCV34_RS04190 0.14 -1.6
913,463 + ABCV34_RS04190 0.14 -1.3
913,463 + ABCV34_RS04190 0.14 +0.2
913,463 + ABCV34_RS04190 0.14 -0.9
913,463 + ABCV34_RS04190 0.14 -1.6
913,463 + ABCV34_RS04190 0.14 +1.3
913,463 + ABCV34_RS04190 0.14 -0.3
913,463 + ABCV34_RS04190 0.14 -0.4
913,464 - ABCV34_RS04190 0.14 -0.1
913,464 - ABCV34_RS04190 0.14 +0.2
913,464 - ABCV34_RS04190 0.14 -2.2
913,464 - ABCV34_RS04190 0.14 -0.4
913,464 - ABCV34_RS04190 0.14 -1.6
913,464 - ABCV34_RS04190 0.14 -1.7
913,464 - ABCV34_RS04190 0.14 -1.0
913,464 - ABCV34_RS04190 0.14 -0.6
913,464 - ABCV34_RS04190 0.14 -3.0
913,464 - ABCV34_RS04190 0.14 -2.4
913,464 - ABCV34_RS04190 0.14 +0.4
913,464 - ABCV34_RS04190 0.14 -0.1

Or see this region's nucleotide sequence