Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS03960

Experiment: Survival; Treatment=FW300; TreatmentDuration=2hrs; Outgrowth=R2A_Kan10_Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABCV34_RS03955 and ABCV34_RS03960 are separated by 85 nucleotidesABCV34_RS03960 and ABCV34_RS03965 are separated by 20 nucleotides ABCV34_RS03955: ABCV34_RS03955 - ankyrin repeat domain-containing protein, at 860,545 to 861,456 _RS03955 ABCV34_RS03960: ABCV34_RS03960 - TatD family hydrolase, at 861,542 to 862,318 _RS03960 ABCV34_RS03965: ABCV34_RS03965 - DNA polymerase III subunit delta', at 862,339 to 863,376 _RS03965 Position (kb) 861 862 863Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 860.543 kb on + strandat 860.543 kb on + strandat 860.544 kb on - strandat 860.544 kb on - strandat 860.585 kb on + strandat 860.585 kb on + strandat 860.586 kb on - strandat 860.763 kb on + strand, within ABCV34_RS03955at 860.763 kb on + strand, within ABCV34_RS03955at 860.764 kb on - strand, within ABCV34_RS03955at 860.776 kb on + strand, within ABCV34_RS03955at 860.777 kb on - strand, within ABCV34_RS03955at 860.777 kb on - strand, within ABCV34_RS03955at 861.035 kb on + strand, within ABCV34_RS03955at 861.035 kb on + strand, within ABCV34_RS03955at 861.036 kb on - strand, within ABCV34_RS03955at 861.036 kb on - strand, within ABCV34_RS03955at 861.082 kb on + strand, within ABCV34_RS03955at 861.082 kb on + strand, within ABCV34_RS03955at 861.082 kb on + strand, within ABCV34_RS03955at 861.083 kb on - strand, within ABCV34_RS03955at 861.083 kb on - strand, within ABCV34_RS03955at 861.083 kb on - strand, within ABCV34_RS03955at 861.083 kb on - strand, within ABCV34_RS03955at 861.083 kb on - strand, within ABCV34_RS03955at 861.117 kb on + strand, within ABCV34_RS03955at 861.117 kb on + strand, within ABCV34_RS03955at 861.117 kb on + strand, within ABCV34_RS03955at 861.118 kb on - strand, within ABCV34_RS03955at 861.118 kb on - strand, within ABCV34_RS03955at 861.118 kb on - strand, within ABCV34_RS03955at 861.118 kb on - strand, within ABCV34_RS03955at 861.118 kb on - strand, within ABCV34_RS03955at 861.125 kb on + strand, within ABCV34_RS03955at 861.125 kb on + strand, within ABCV34_RS03955at 861.125 kb on + strand, within ABCV34_RS03955at 861.125 kb on + strand, within ABCV34_RS03955at 861.125 kb on + strand, within ABCV34_RS03955at 861.125 kb on + strand, within ABCV34_RS03955at 861.125 kb on + strand, within ABCV34_RS03955at 861.125 kb on + strand, within ABCV34_RS03955at 861.125 kb on + strand, within ABCV34_RS03955at 861.125 kb on + strand, within ABCV34_RS03955at 861.125 kb on + strand, within ABCV34_RS03955at 861.125 kb on + strand, within ABCV34_RS03955at 861.125 kb on + strand, within ABCV34_RS03955at 861.125 kb on + strand, within ABCV34_RS03955at 861.125 kb on + strand, within ABCV34_RS03955at 861.125 kb on + strand, within ABCV34_RS03955at 861.125 kb on + strand, within ABCV34_RS03955at 861.125 kb on + strand, within ABCV34_RS03955at 861.125 kb on + strand, within ABCV34_RS03955at 861.125 kb on + strand, within ABCV34_RS03955at 861.126 kb on - strand, within ABCV34_RS03955at 861.126 kb on - strand, within ABCV34_RS03955at 861.126 kb on - strand, within ABCV34_RS03955at 861.126 kb on - strand, within ABCV34_RS03955at 861.126 kb on - strand, within ABCV34_RS03955at 861.126 kb on - strand, within ABCV34_RS03955at 861.126 kb on - strand, within ABCV34_RS03955at 861.126 kb on - strand, within ABCV34_RS03955at 861.126 kb on - strand, within ABCV34_RS03955at 861.126 kb on - strand, within ABCV34_RS03955at 861.126 kb on - strand, within ABCV34_RS03955at 861.126 kb on - strand, within ABCV34_RS03955at 861.126 kb on - strand, within ABCV34_RS03955at 861.126 kb on - strand, within ABCV34_RS03955at 861.126 kb on - strand, within ABCV34_RS03955at 861.126 kb on - strand, within ABCV34_RS03955at 861.126 kb on - strand, within ABCV34_RS03955at 861.126 kb on - strand, within ABCV34_RS03955at 861.199 kb on + strand, within ABCV34_RS03955at 861.296 kb on - strand, within ABCV34_RS03955at 861.304 kb on + strand, within ABCV34_RS03955at 861.304 kb on + strand, within ABCV34_RS03955at 861.304 kb on + strand, within ABCV34_RS03955at 861.305 kb on - strand, within ABCV34_RS03955at 861.305 kb on - strand, within ABCV34_RS03955at 861.305 kb on - strand, within ABCV34_RS03955at 861.305 kb on - strand, within ABCV34_RS03955at 861.305 kb on - strand, within ABCV34_RS03955at 861.573 kb on + strandat 861.573 kb on + strandat 861.573 kb on + strandat 861.573 kb on + strandat 861.573 kb on + strandat 861.573 kb on + strandat 861.573 kb on + strandat 861.573 kb on + strandat 861.573 kb on + strandat 861.573 kb on + strandat 861.573 kb on + strandat 861.573 kb on + strandat 861.573 kb on + strandat 861.573 kb on + strandat 861.574 kb on - strandat 861.574 kb on - strandat 861.574 kb on - strandat 861.699 kb on + strand, within ABCV34_RS03960at 861.700 kb on - strand, within ABCV34_RS03960at 861.700 kb on - strand, within ABCV34_RS03960at 861.700 kb on - strand, within ABCV34_RS03960at 861.804 kb on + strand, within ABCV34_RS03960at 861.805 kb on - strand, within ABCV34_RS03960at 861.805 kb on - strand, within ABCV34_RS03960at 862.017 kb on + strand, within ABCV34_RS03960at 862.018 kb on - strand, within ABCV34_RS03960at 862.018 kb on - strand, within ABCV34_RS03960at 862.018 kb on - strand, within ABCV34_RS03960at 862.020 kb on + strand, within ABCV34_RS03960at 862.020 kb on + strand, within ABCV34_RS03960at 862.020 kb on + strand, within ABCV34_RS03960at 862.020 kb on + strand, within ABCV34_RS03960at 862.020 kb on + strand, within ABCV34_RS03960at 862.020 kb on + strand, within ABCV34_RS03960at 862.020 kb on + strand, within ABCV34_RS03960at 862.020 kb on + strand, within ABCV34_RS03960at 862.020 kb on + strand, within ABCV34_RS03960at 862.021 kb on - strand, within ABCV34_RS03960at 862.021 kb on - strand, within ABCV34_RS03960at 862.021 kb on - strand, within ABCV34_RS03960at 862.161 kb on + strand, within ABCV34_RS03960at 862.161 kb on + strand, within ABCV34_RS03960at 862.162 kb on - strand, within ABCV34_RS03960at 862.314 kb on + strandat 862.314 kb on + strandat 862.314 kb on + strandat 862.314 kb on + strandat 862.314 kb on + strandat 862.314 kb on + strandat 862.314 kb on + strandat 862.314 kb on + strandat 862.314 kb on + strandat 862.314 kb on + strandat 862.314 kb on + strandat 862.314 kb on + strandat 862.314 kb on + strandat 862.314 kb on + strandat 862.314 kb on + strandat 862.314 kb on + strandat 862.314 kb on + strandat 862.314 kb on + strandat 862.314 kb on + strandat 862.314 kb on + strandat 862.314 kb on + strandat 862.315 kb on - strandat 862.315 kb on - strandat 862.315 kb on - strandat 862.315 kb on - strandat 862.315 kb on - strandat 862.315 kb on - strandat 862.315 kb on - strandat 862.315 kb on - strandat 862.315 kb on - strandat 862.315 kb on - strandat 862.315 kb on - strandat 862.315 kb on - strandat 862.315 kb on - strandat 862.315 kb on - strandat 862.315 kb on - strandat 862.315 kb on - strandat 862.315 kb on - strandat 862.315 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW300; TreatmentDuration=2hrs; Outgrowth=R2A_Kan10_Lactate
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860,543 + -1.0
860,543 + +0.2
860,544 - -1.7
860,544 - +2.4
860,585 + -0.5
860,585 + -0.7
860,586 - -0.5
860,763 + ABCV34_RS03955 0.24 -0.3
860,763 + ABCV34_RS03955 0.24 +0.4
860,764 - ABCV34_RS03955 0.24 -1.6
860,776 + ABCV34_RS03955 0.25 -1.4
860,777 - ABCV34_RS03955 0.25 -0.3
860,777 - ABCV34_RS03955 0.25 -1.0
861,035 + ABCV34_RS03955 0.54 +1.0
861,035 + ABCV34_RS03955 0.54 -2.1
861,036 - ABCV34_RS03955 0.54 -1.3
861,036 - ABCV34_RS03955 0.54 -0.6
861,082 + ABCV34_RS03955 0.59 -1.1
861,082 + ABCV34_RS03955 0.59 -0.4
861,082 + ABCV34_RS03955 0.59 -2.2
861,083 - ABCV34_RS03955 0.59 -0.6
861,083 - ABCV34_RS03955 0.59 -1.3
861,083 - ABCV34_RS03955 0.59 +2.0
861,083 - ABCV34_RS03955 0.59 -0.8
861,083 - ABCV34_RS03955 0.59 -1.0
861,117 + ABCV34_RS03955 0.63 -1.8
861,117 + ABCV34_RS03955 0.63 -1.0
861,117 + ABCV34_RS03955 0.63 +1.6
861,118 - ABCV34_RS03955 0.63 -0.8
861,118 - ABCV34_RS03955 0.63 -1.1
861,118 - ABCV34_RS03955 0.63 -0.8
861,118 - ABCV34_RS03955 0.63 -0.6
861,118 - ABCV34_RS03955 0.63 +0.5
861,125 + ABCV34_RS03955 0.64 -0.5
861,125 + ABCV34_RS03955 0.64 -2.1
861,125 + ABCV34_RS03955 0.64 +0.9
861,125 + ABCV34_RS03955 0.64 -1.1
861,125 + ABCV34_RS03955 0.64 -0.9
861,125 + ABCV34_RS03955 0.64 -1.6
861,125 + ABCV34_RS03955 0.64 -0.4
861,125 + ABCV34_RS03955 0.64 -1.1
861,125 + ABCV34_RS03955 0.64 +1.3
861,125 + ABCV34_RS03955 0.64 -2.5
861,125 + ABCV34_RS03955 0.64 -1.6
861,125 + ABCV34_RS03955 0.64 -1.4
861,125 + ABCV34_RS03955 0.64 -0.8
861,125 + ABCV34_RS03955 0.64 -2.3
861,125 + ABCV34_RS03955 0.64 +0.5
861,125 + ABCV34_RS03955 0.64 -1.6
861,125 + ABCV34_RS03955 0.64 -3.3
861,125 + ABCV34_RS03955 0.64 -0.4
861,125 + ABCV34_RS03955 0.64 -1.8
861,125 + ABCV34_RS03955 0.64 -0.5
861,126 - ABCV34_RS03955 0.64 -1.7
861,126 - ABCV34_RS03955 0.64 +0.3
861,126 - ABCV34_RS03955 0.64 -1.7
861,126 - ABCV34_RS03955 0.64 -0.2
861,126 - ABCV34_RS03955 0.64 -0.5
861,126 - ABCV34_RS03955 0.64 +0.3
861,126 - ABCV34_RS03955 0.64 -1.1
861,126 - ABCV34_RS03955 0.64 -0.2
861,126 - ABCV34_RS03955 0.64 -0.6
861,126 - ABCV34_RS03955 0.64 +0.9
861,126 - ABCV34_RS03955 0.64 -0.4
861,126 - ABCV34_RS03955 0.64 +1.6
861,126 - ABCV34_RS03955 0.64 +0.4
861,126 - ABCV34_RS03955 0.64 +0.4
861,126 - ABCV34_RS03955 0.64 -1.0
861,126 - ABCV34_RS03955 0.64 +0.0
861,126 - ABCV34_RS03955 0.64 -1.6
861,126 - ABCV34_RS03955 0.64 -1.3
861,199 + ABCV34_RS03955 0.72 -0.4
861,296 - ABCV34_RS03955 0.82 +0.0
861,304 + ABCV34_RS03955 0.83 +0.2
861,304 + ABCV34_RS03955 0.83 -1.5
861,304 + ABCV34_RS03955 0.83 -2.2
861,305 - ABCV34_RS03955 0.83 -1.4
861,305 - ABCV34_RS03955 0.83 -0.0
861,305 - ABCV34_RS03955 0.83 -0.7
861,305 - ABCV34_RS03955 0.83 -0.2
861,305 - ABCV34_RS03955 0.83 +2.4
861,573 + -1.4
861,573 + +1.0
861,573 + -1.0
861,573 + -1.9
861,573 + -1.3
861,573 + +1.0
861,573 + -0.5
861,573 + -1.3
861,573 + +0.4
861,573 + -0.8
861,573 + +0.5
861,573 + -1.3
861,573 + -1.7
861,573 + -1.3
861,574 - -1.4
861,574 - +0.0
861,574 - -1.6
861,699 + ABCV34_RS03960 0.20 -0.2
861,700 - ABCV34_RS03960 0.20 -1.8
861,700 - ABCV34_RS03960 0.20 -1.4
861,700 - ABCV34_RS03960 0.20 -0.3
861,804 + ABCV34_RS03960 0.34 -1.9
861,805 - ABCV34_RS03960 0.34 -1.4
861,805 - ABCV34_RS03960 0.34 -3.6
862,017 + ABCV34_RS03960 0.61 -1.4
862,018 - ABCV34_RS03960 0.61 -2.3
862,018 - ABCV34_RS03960 0.61 -1.4
862,018 - ABCV34_RS03960 0.61 -2.9
862,020 + ABCV34_RS03960 0.62 -2.2
862,020 + ABCV34_RS03960 0.62 -1.6
862,020 + ABCV34_RS03960 0.62 +0.2
862,020 + ABCV34_RS03960 0.62 -2.7
862,020 + ABCV34_RS03960 0.62 -1.0
862,020 + ABCV34_RS03960 0.62 -1.1
862,020 + ABCV34_RS03960 0.62 -1.9
862,020 + ABCV34_RS03960 0.62 -1.7
862,020 + ABCV34_RS03960 0.62 -0.7
862,021 - ABCV34_RS03960 0.62 -1.1
862,021 - ABCV34_RS03960 0.62 -2.4
862,021 - ABCV34_RS03960 0.62 -0.6
862,161 + ABCV34_RS03960 0.80 -0.3
862,161 + ABCV34_RS03960 0.80 -3.9
862,162 - ABCV34_RS03960 0.80 -0.6
862,314 + +0.6
862,314 + -2.1
862,314 + -1.2
862,314 + +0.1
862,314 + -0.8
862,314 + -0.6
862,314 + -1.4
862,314 + -0.5
862,314 + -2.1
862,314 + -0.6
862,314 + -1.1
862,314 + -3.5
862,314 + -0.2
862,314 + -0.6
862,314 + +0.1
862,314 + -1.6
862,314 + -1.1
862,314 + +0.7
862,314 + -0.9
862,314 + +0.7
862,314 + -0.1
862,315 - -2.0
862,315 - +2.0
862,315 - +0.5
862,315 - -1.2
862,315 - -1.4
862,315 - -0.1
862,315 - -0.4
862,315 - -2.4
862,315 - -0.6
862,315 - -1.0
862,315 - -0.1
862,315 - +2.8
862,315 - +1.0
862,315 - -1.6
862,315 - -2.1
862,315 - +0.8
862,315 - +0.7
862,315 - +0.1

Or see this region's nucleotide sequence