Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS03945

Experiment: Survival; Treatment=FW300; TreatmentDuration=2hrs; Outgrowth=R2A_Kan10_Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABCV34_RS03935 and ABCV34_RS03940 are separated by 0 nucleotidesABCV34_RS03940 and ABCV34_RS03945 are separated by 17 nucleotidesABCV34_RS03945 and ABCV34_RS03950 overlap by 4 nucleotides ABCV34_RS03935: ABCV34_RS03935 - sulfate ABC transporter substrate-binding protein, at 856,676 to 857,683 _RS03935 ABCV34_RS03940: ABCV34_RS03940 - sulfate ABC transporter permease subunit CysT, at 857,684 to 858,532 _RS03940 ABCV34_RS03945: ABCV34_RS03945 - sulfate ABC transporter permease subunit CysW, at 858,550 to 859,437 _RS03945 ABCV34_RS03950: ABCV34_RS03950 - sulfate ABC transporter ATP-binding protein, at 859,434 to 860,522 _RS03950 Position (kb) 858 859 860Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 857.663 kb on + strandat 857.664 kb on - strandat 857.664 kb on - strandat 857.681 kb on + strandat 857.681 kb on + strandat 857.681 kb on + strandat 857.681 kb on + strandat 857.682 kb on - strandat 857.682 kb on - strandat 857.682 kb on - strandat 857.682 kb on - strandat 857.737 kb on + strandat 857.737 kb on + strandat 857.765 kb on + strandat 857.765 kb on + strandat 857.765 kb on + strandat 857.766 kb on - strandat 857.766 kb on - strandat 857.877 kb on - strand, within ABCV34_RS03940at 858.053 kb on + strand, within ABCV34_RS03940at 858.053 kb on + strand, within ABCV34_RS03940at 858.053 kb on + strand, within ABCV34_RS03940at 858.053 kb on + strand, within ABCV34_RS03940at 858.053 kb on + strand, within ABCV34_RS03940at 858.053 kb on + strand, within ABCV34_RS03940at 858.054 kb on - strand, within ABCV34_RS03940at 858.054 kb on - strand, within ABCV34_RS03940at 858.054 kb on - strand, within ABCV34_RS03940at 858.054 kb on - strand, within ABCV34_RS03940at 858.054 kb on - strand, within ABCV34_RS03940at 858.054 kb on - strand, within ABCV34_RS03940at 858.054 kb on - strand, within ABCV34_RS03940at 858.120 kb on + strand, within ABCV34_RS03940at 858.207 kb on - strand, within ABCV34_RS03940at 858.207 kb on - strand, within ABCV34_RS03940at 858.207 kb on - strand, within ABCV34_RS03940at 858.207 kb on - strand, within ABCV34_RS03940at 858.223 kb on + strand, within ABCV34_RS03940at 858.223 kb on + strand, within ABCV34_RS03940at 858.223 kb on + strand, within ABCV34_RS03940at 858.223 kb on + strand, within ABCV34_RS03940at 858.224 kb on - strand, within ABCV34_RS03940at 858.224 kb on - strand, within ABCV34_RS03940at 858.224 kb on - strand, within ABCV34_RS03940at 858.243 kb on + strand, within ABCV34_RS03940at 858.243 kb on + strand, within ABCV34_RS03940at 858.244 kb on - strand, within ABCV34_RS03940at 858.244 kb on - strand, within ABCV34_RS03940at 858.244 kb on - strand, within ABCV34_RS03940at 858.332 kb on + strand, within ABCV34_RS03940at 858.416 kb on + strand, within ABCV34_RS03940at 858.416 kb on + strand, within ABCV34_RS03940at 858.416 kb on + strand, within ABCV34_RS03940at 858.416 kb on + strand, within ABCV34_RS03940at 858.416 kb on + strand, within ABCV34_RS03940at 858.417 kb on - strand, within ABCV34_RS03940at 858.417 kb on - strand, within ABCV34_RS03940at 858.417 kb on - strand, within ABCV34_RS03940at 858.417 kb on - strand, within ABCV34_RS03940at 858.422 kb on + strand, within ABCV34_RS03940at 858.422 kb on + strand, within ABCV34_RS03940at 858.422 kb on + strand, within ABCV34_RS03940at 858.422 kb on + strand, within ABCV34_RS03940at 858.422 kb on + strand, within ABCV34_RS03940at 858.423 kb on - strand, within ABCV34_RS03940at 858.424 kb on + strand, within ABCV34_RS03940at 858.424 kb on + strand, within ABCV34_RS03940at 858.424 kb on + strand, within ABCV34_RS03940at 858.517 kb on + strandat 858.617 kb on - strandat 858.617 kb on - strandat 858.617 kb on - strandat 858.617 kb on - strandat 858.617 kb on - strandat 858.869 kb on + strand, within ABCV34_RS03945at 858.869 kb on + strand, within ABCV34_RS03945at 858.870 kb on - strand, within ABCV34_RS03945at 858.928 kb on + strand, within ABCV34_RS03945at 858.928 kb on + strand, within ABCV34_RS03945at 858.928 kb on + strand, within ABCV34_RS03945at 858.928 kb on + strand, within ABCV34_RS03945at 858.928 kb on + strand, within ABCV34_RS03945at 858.929 kb on - strand, within ABCV34_RS03945at 858.929 kb on - strand, within ABCV34_RS03945at 858.929 kb on - strand, within ABCV34_RS03945at 858.929 kb on - strand, within ABCV34_RS03945at 858.929 kb on - strand, within ABCV34_RS03945at 858.929 kb on - strand, within ABCV34_RS03945at 858.929 kb on - strand, within ABCV34_RS03945at 858.929 kb on - strand, within ABCV34_RS03945at 858.929 kb on - strand, within ABCV34_RS03945at 858.929 kb on - strand, within ABCV34_RS03945at 858.929 kb on - strand, within ABCV34_RS03945at 858.929 kb on - strand, within ABCV34_RS03945at 858.929 kb on - strand, within ABCV34_RS03945at 858.929 kb on - strand, within ABCV34_RS03945at 858.929 kb on - strand, within ABCV34_RS03945at 859.028 kb on + strand, within ABCV34_RS03945at 859.029 kb on - strand, within ABCV34_RS03945at 859.294 kb on + strand, within ABCV34_RS03945at 859.294 kb on + strand, within ABCV34_RS03945at 859.295 kb on - strand, within ABCV34_RS03945at 859.303 kb on + strand, within ABCV34_RS03945at 859.394 kb on + strandat 859.395 kb on - strandat 859.440 kb on - strandat 859.681 kb on - strand, within ABCV34_RS03950at 860.256 kb on + strand, within ABCV34_RS03950at 860.256 kb on + strand, within ABCV34_RS03950at 860.257 kb on - strand, within ABCV34_RS03950at 860.257 kb on - strand, within ABCV34_RS03950at 860.257 kb on - strand, within ABCV34_RS03950at 860.257 kb on - strand, within ABCV34_RS03950at 860.257 kb on - strand, within ABCV34_RS03950

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW300; TreatmentDuration=2hrs; Outgrowth=R2A_Kan10_Lactate
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857,663 + +1.4
857,664 - -0.6
857,664 - +0.6
857,681 + +1.2
857,681 + -0.5
857,681 + +0.6
857,681 + +0.1
857,682 - -1.0
857,682 - -0.1
857,682 - +0.6
857,682 - -0.3
857,737 + +2.0
857,737 + -0.8
857,765 + -2.4
857,765 + -2.6
857,765 + -0.7
857,766 - +2.0
857,766 - -2.7
857,877 - ABCV34_RS03940 0.23 -0.7
858,053 + ABCV34_RS03940 0.43 +0.4
858,053 + ABCV34_RS03940 0.43 -0.4
858,053 + ABCV34_RS03940 0.43 -0.3
858,053 + ABCV34_RS03940 0.43 -1.9
858,053 + ABCV34_RS03940 0.43 +0.0
858,053 + ABCV34_RS03940 0.43 -1.0
858,054 - ABCV34_RS03940 0.44 -0.6
858,054 - ABCV34_RS03940 0.44 -0.5
858,054 - ABCV34_RS03940 0.44 +0.4
858,054 - ABCV34_RS03940 0.44 -2.3
858,054 - ABCV34_RS03940 0.44 -0.7
858,054 - ABCV34_RS03940 0.44 +0.4
858,054 - ABCV34_RS03940 0.44 -1.1
858,120 + ABCV34_RS03940 0.51 -0.3
858,207 - ABCV34_RS03940 0.62 +0.2
858,207 - ABCV34_RS03940 0.62 -1.0
858,207 - ABCV34_RS03940 0.62 +0.0
858,207 - ABCV34_RS03940 0.62 -0.3
858,223 + ABCV34_RS03940 0.63 -0.7
858,223 + ABCV34_RS03940 0.63 -0.4
858,223 + ABCV34_RS03940 0.63 +0.5
858,223 + ABCV34_RS03940 0.63 -0.3
858,224 - ABCV34_RS03940 0.64 -1.1
858,224 - ABCV34_RS03940 0.64 -3.2
858,224 - ABCV34_RS03940 0.64 -0.6
858,243 + ABCV34_RS03940 0.66 -1.8
858,243 + ABCV34_RS03940 0.66 -0.2
858,244 - ABCV34_RS03940 0.66 -0.8
858,244 - ABCV34_RS03940 0.66 +0.0
858,244 - ABCV34_RS03940 0.66 -1.4
858,332 + ABCV34_RS03940 0.76 -1.3
858,416 + ABCV34_RS03940 0.86 -0.4
858,416 + ABCV34_RS03940 0.86 -1.4
858,416 + ABCV34_RS03940 0.86 -1.7
858,416 + ABCV34_RS03940 0.86 -0.5
858,416 + ABCV34_RS03940 0.86 -1.6
858,417 - ABCV34_RS03940 0.86 -0.6
858,417 - ABCV34_RS03940 0.86 -2.1
858,417 - ABCV34_RS03940 0.86 -0.6
858,417 - ABCV34_RS03940 0.86 -0.6
858,422 + ABCV34_RS03940 0.87 -0.7
858,422 + ABCV34_RS03940 0.87 -2.2
858,422 + ABCV34_RS03940 0.87 -1.5
858,422 + ABCV34_RS03940 0.87 -1.1
858,422 + ABCV34_RS03940 0.87 -0.8
858,423 - ABCV34_RS03940 0.87 -3.0
858,424 + ABCV34_RS03940 0.87 +0.4
858,424 + ABCV34_RS03940 0.87 +0.2
858,424 + ABCV34_RS03940 0.87 -0.1
858,517 + +0.0
858,617 - -0.8
858,617 - -1.7
858,617 - +0.2
858,617 - +1.1
858,617 - +0.4
858,869 + ABCV34_RS03945 0.36 +0.8
858,869 + ABCV34_RS03945 0.36 -3.0
858,870 - ABCV34_RS03945 0.36 +2.0
858,928 + ABCV34_RS03945 0.43 -0.3
858,928 + ABCV34_RS03945 0.43 +0.4
858,928 + ABCV34_RS03945 0.43 -0.4
858,928 + ABCV34_RS03945 0.43 -1.7
858,928 + ABCV34_RS03945 0.43 +0.3
858,929 - ABCV34_RS03945 0.43 -1.8
858,929 - ABCV34_RS03945 0.43 -1.1
858,929 - ABCV34_RS03945 0.43 +0.2
858,929 - ABCV34_RS03945 0.43 -2.2
858,929 - ABCV34_RS03945 0.43 +1.0
858,929 - ABCV34_RS03945 0.43 -1.3
858,929 - ABCV34_RS03945 0.43 -0.8
858,929 - ABCV34_RS03945 0.43 -3.0
858,929 - ABCV34_RS03945 0.43 -1.4
858,929 - ABCV34_RS03945 0.43 +2.4
858,929 - ABCV34_RS03945 0.43 -2.2
858,929 - ABCV34_RS03945 0.43 -3.2
858,929 - ABCV34_RS03945 0.43 -0.6
858,929 - ABCV34_RS03945 0.43 -0.1
858,929 - ABCV34_RS03945 0.43 +0.2
859,028 + ABCV34_RS03945 0.54 +0.0
859,029 - ABCV34_RS03945 0.54 -0.6
859,294 + ABCV34_RS03945 0.84 -0.8
859,294 + ABCV34_RS03945 0.84 -1.0
859,295 - ABCV34_RS03945 0.84 +0.0
859,303 + ABCV34_RS03945 0.85 +0.4
859,394 + -0.8
859,395 - +2.0
859,440 - +0.7
859,681 - ABCV34_RS03950 0.23 +0.4
860,256 + ABCV34_RS03950 0.75 -2.0
860,256 + ABCV34_RS03950 0.75 +1.8
860,257 - ABCV34_RS03950 0.76 -0.8
860,257 - ABCV34_RS03950 0.76 -1.0
860,257 - ABCV34_RS03950 0.76 +3.0
860,257 - ABCV34_RS03950 0.76 -2.1
860,257 - ABCV34_RS03950 0.76 -0.3

Or see this region's nucleotide sequence